Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0671

Experiment: m.b. nitrite 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0669 and Echvi_0670 are separated by 206 nucleotidesEchvi_0670 and Echvi_0671 are separated by 8 nucleotidesEchvi_0671 and Echvi_0672 are separated by 50 nucleotidesEchvi_0672 and Echvi_0673 are separated by 90 nucleotides Echvi_0669: Echvi_0669 - ribonuclease R, at 751,117 to 753,291 _0669 Echvi_0670: Echvi_0670 - DNA polymerase elongation subunit (family B), at 753,498 to 754,223 _0670 Echvi_0671: Echvi_0671 - hypothetical protein, at 754,232 to 754,633 _0671 Echvi_0672: Echvi_0672 - lipoate-protein ligase B, at 754,684 to 755,442 _0672 Echvi_0673: Echvi_0673 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 755,533 to 755,889 _0673 Position (kb) 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 753.244 kb on - strandat 753.333 kb on - strandat 753.380 kb on - strandat 753.400 kb on - strandat 753.416 kb on + strandat 753.416 kb on + strandat 753.440 kb on + strandat 753.457 kb on + strandat 753.457 kb on + strandat 753.458 kb on - strandat 753.469 kb on + strandat 753.470 kb on - strandat 753.477 kb on + strandat 753.478 kb on - strandat 753.499 kb on + strandat 753.499 kb on + strandat 753.499 kb on + strandat 753.500 kb on - strandat 753.530 kb on + strandat 753.560 kb on - strandat 753.560 kb on - strandat 753.580 kb on - strand, within Echvi_0670at 753.587 kb on + strand, within Echvi_0670at 753.595 kb on + strand, within Echvi_0670at 753.596 kb on - strand, within Echvi_0670at 753.596 kb on - strand, within Echvi_0670at 753.596 kb on - strand, within Echvi_0670at 753.596 kb on - strand, within Echvi_0670at 753.599 kb on + strand, within Echvi_0670at 753.600 kb on - strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.657 kb on + strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.658 kb on - strand, within Echvi_0670at 753.659 kb on + strand, within Echvi_0670at 753.659 kb on + strand, within Echvi_0670at 753.715 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.724 kb on + strand, within Echvi_0670at 753.814 kb on - strand, within Echvi_0670at 753.818 kb on + strand, within Echvi_0670at 753.819 kb on - strand, within Echvi_0670at 753.900 kb on + strand, within Echvi_0670at 753.991 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.041 kb on + strand, within Echvi_0670at 754.042 kb on - strand, within Echvi_0670at 754.042 kb on - strand, within Echvi_0670at 754.043 kb on + strand, within Echvi_0670at 754.043 kb on + strand, within Echvi_0670at 754.060 kb on + strand, within Echvi_0670at 754.062 kb on + strand, within Echvi_0670at 754.128 kb on + strand, within Echvi_0670at 754.224 kb on - strandat 754.328 kb on + strand, within Echvi_0671at 754.328 kb on + strand, within Echvi_0671at 754.329 kb on - strand, within Echvi_0671at 754.341 kb on - strand, within Echvi_0671at 754.341 kb on - strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.344 kb on + strand, within Echvi_0671at 754.344 kb on + strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.347 kb on + strand, within Echvi_0671at 754.347 kb on + strand, within Echvi_0671at 754.348 kb on - strand, within Echvi_0671at 754.348 kb on - strand, within Echvi_0671at 754.438 kb on + strand, within Echvi_0671at 754.438 kb on + strand, within Echvi_0671at 754.439 kb on - strand, within Echvi_0671at 754.540 kb on + strand, within Echvi_0671at 754.540 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.561 kb on + strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.619 kb on + strandat 754.636 kb on + strandat 754.636 kb on + strandat 754.637 kb on - strandat 754.637 kb on - strandat 754.640 kb on - strandat 754.650 kb on + strandat 754.651 kb on - strandat 754.667 kb on - strandat 755.409 kb on - strandat 755.425 kb on + strandat 755.529 kb on + strandat 755.547 kb on + strandat 755.547 kb on + strandat 755.547 kb on + strandat 755.548 kb on - strandat 755.604 kb on + strand, within Echvi_0673at 755.604 kb on + strand, within Echvi_0673at 755.605 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.631 kb on + strand, within Echvi_0673at 755.631 kb on + strand, within Echvi_0673

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
remove
753,244 - +0.5
753,333 - +1.5
753,380 - +1.0
753,400 - +1.2
753,416 + -2.3
753,416 + -0.4
753,440 + -0.0
753,457 + +0.6
753,457 + -0.9
753,458 - +0.6
753,469 + -0.3
753,470 - +1.7
753,477 + +1.2
753,478 - +0.9
753,499 + +0.3
753,499 + +0.2
753,499 + -0.7
753,500 - -1.1
753,530 + -0.4
753,560 - +1.7
753,560 - +2.3
753,580 - Echvi_0670 0.11 +2.0
753,587 + Echvi_0670 0.12 -0.7
753,595 + Echvi_0670 0.13 -1.6
753,596 - Echvi_0670 0.13 +2.7
753,596 - Echvi_0670 0.13 +1.9
753,596 - Echvi_0670 0.13 +1.7
753,596 - Echvi_0670 0.13 +0.7
753,599 + Echvi_0670 0.14 -0.7
753,600 - Echvi_0670 0.14 +1.0
753,657 + Echvi_0670 0.22 -0.4
753,657 + Echvi_0670 0.22 -0.8
753,657 + Echvi_0670 0.22 +0.2
753,657 + Echvi_0670 0.22 -1.0
753,657 + Echvi_0670 0.22 +0.1
753,657 + Echvi_0670 0.22 -0.2
753,658 - Echvi_0670 0.22 +0.1
753,658 - Echvi_0670 0.22 +1.6
753,658 - Echvi_0670 0.22 +0.8
753,658 - Echvi_0670 0.22 +0.7
753,658 - Echvi_0670 0.22 +0.8
753,659 + Echvi_0670 0.22 -0.8
753,659 + Echvi_0670 0.22 -0.8
753,715 + Echvi_0670 0.30 +0.2
753,722 + Echvi_0670 0.31 -0.6
753,722 + Echvi_0670 0.31 +0.1
753,722 + Echvi_0670 0.31 +0.5
753,723 - Echvi_0670 0.31 +0.4
753,723 - Echvi_0670 0.31 +2.4
753,723 - Echvi_0670 0.31 +1.0
753,723 - Echvi_0670 0.31 +3.5
753,723 - Echvi_0670 0.31 +2.5
753,724 + Echvi_0670 0.31 -0.7
753,814 - Echvi_0670 0.44 +1.3
753,818 + Echvi_0670 0.44 +0.4
753,819 - Echvi_0670 0.44 +0.7
753,900 + Echvi_0670 0.55 +0.2
753,991 + Echvi_0670 0.68 -1.9
754,039 + Echvi_0670 0.75 -1.2
754,039 + Echvi_0670 0.75 +0.8
754,039 + Echvi_0670 0.75 +1.1
754,039 + Echvi_0670 0.75 +1.8
754,040 - Echvi_0670 0.75 +2.7
754,040 - Echvi_0670 0.75 +2.8
754,040 - Echvi_0670 0.75 +0.3
754,040 - Echvi_0670 0.75 +0.3
754,040 - Echvi_0670 0.75 +0.7
754,041 + Echvi_0670 0.75 +0.2
754,042 - Echvi_0670 0.75 +1.8
754,042 - Echvi_0670 0.75 +0.7
754,043 + Echvi_0670 0.75 +0.9
754,043 + Echvi_0670 0.75 -1.7
754,060 + Echvi_0670 0.77 +1.4
754,062 + Echvi_0670 0.78 +0.7
754,128 + Echvi_0670 0.87 +0.8
754,224 - -0.2
754,328 + Echvi_0671 0.24 -1.6
754,328 + Echvi_0671 0.24 -3.0
754,329 - Echvi_0671 0.24 +0.3
754,341 - Echvi_0671 0.27 +1.5
754,341 - Echvi_0671 0.27 +0.5
754,342 + Echvi_0671 0.27 +1.4
754,342 + Echvi_0671 0.27 -0.3
754,342 + Echvi_0671 0.27 +0.9
754,344 + Echvi_0671 0.28 +0.9
754,344 + Echvi_0671 0.28 -1.7
754,345 - Echvi_0671 0.28 +0.9
754,345 - Echvi_0671 0.28 +0.7
754,345 - Echvi_0671 0.28 -1.2
754,347 + Echvi_0671 0.29 -0.1
754,347 + Echvi_0671 0.29 +0.5
754,348 - Echvi_0671 0.29 +1.3
754,348 - Echvi_0671 0.29 +0.9
754,438 + Echvi_0671 0.51 +0.9
754,438 + Echvi_0671 0.51 +0.6
754,439 - Echvi_0671 0.51 -0.3
754,540 + Echvi_0671 0.77 +0.5
754,540 + Echvi_0671 0.77 -1.0
754,542 + Echvi_0671 0.77 +1.7
754,542 + Echvi_0671 0.77 +1.5
754,542 + Echvi_0671 0.77 +0.8
754,543 - Echvi_0671 0.77 +0.1
754,543 - Echvi_0671 0.77 +0.5
754,543 - Echvi_0671 0.77 +2.0
754,561 + Echvi_0671 0.82 +0.9
754,562 - Echvi_0671 0.82 +1.2
754,562 - Echvi_0671 0.82 +0.1
754,562 - Echvi_0671 0.82 -0.3
754,562 - Echvi_0671 0.82 +1.9
754,619 + -1.1
754,636 + +0.2
754,636 + +0.8
754,637 - +0.7
754,637 - +0.3
754,640 - +0.4
754,650 + -0.1
754,651 - -0.3
754,667 - +1.3
755,409 - +0.4
755,425 + +0.2
755,529 + +1.1
755,547 + +0.2
755,547 + +1.1
755,547 + -1.0
755,548 - +0.5
755,604 + Echvi_0673 0.20 -0.0
755,604 + Echvi_0673 0.20 -0.3
755,605 - Echvi_0673 0.20 +1.9
755,624 - Echvi_0673 0.25 +1.0
755,624 - Echvi_0673 0.25 +0.4
755,624 - Echvi_0673 0.25 +1.3
755,631 + Echvi_0673 0.27 +0.3
755,631 + Echvi_0673 0.27 +0.3

Or see this region's nucleotide sequence