Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0335 and Echvi_0336 are separated by 156 nucleotides Echvi_0336 and Echvi_0337 are separated by 141 nucleotides Echvi_0337 and Echvi_0338 are separated by 243 nucleotides
Echvi_0335: Echvi_0335 - Uncharacterized protein conserved in bacteria, at 357,353 to 358,105
_0335
Echvi_0336: Echvi_0336 - rare lipoprotein A, at 358,262 to 358,624
_0336
Echvi_0337: Echvi_0337 - 3-phosphoglycerate kinase, at 358,766 to 359,965
_0337
Echvi_0338: Echvi_0338 - Sua5/YciO/YrdC/YwlC family protein, at 360,209 to 361,171
_0338
Position (kb) 358
359
360 Strain fitness (log2 ratio) -1
0
1 at 357.941 kb on + strand, within Echvi_0335 at 357.993 kb on - strand, within Echvi_0335 at 357.993 kb on - strand, within Echvi_0335 at 357.994 kb on + strand, within Echvi_0335 at 357.994 kb on + strand, within Echvi_0335 at 357.995 kb on - strand, within Echvi_0335 at 358.036 kb on - strand at 358.036 kb on - strand at 358.036 kb on - strand at 358.169 kb on + strand at 358.193 kb on + strand at 358.204 kb on + strand at 358.222 kb on + strand at 358.222 kb on + strand at 358.222 kb on + strand at 358.260 kb on - strand at 358.262 kb on - strand at 358.275 kb on + strand at 358.276 kb on - strand at 358.276 kb on - strand at 358.368 kb on - strand, within Echvi_0336 at 358.615 kb on - strand at 358.615 kb on - strand at 358.620 kb on - strand at 358.727 kb on + strand at 359.970 kb on - strand at 359.970 kb on - strand at 359.974 kb on - strand at 359.974 kb on - strand at 360.088 kb on + strand at 360.117 kb on + strand at 360.162 kb on + strand at 360.179 kb on - strand at 360.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 357,941 + Echvi_0335 0.78 -0.0 357,993 - Echvi_0335 0.85 +0.8 357,993 - Echvi_0335 0.85 +0.6 357,994 + Echvi_0335 0.85 +0.9 357,994 + Echvi_0335 0.85 +0.1 357,995 - Echvi_0335 0.85 -0.8 358,036 - +1.2 358,036 - +1.2 358,036 - +0.2 358,169 + -0.6 358,193 + +0.1 358,204 + -0.5 358,222 + -0.0 358,222 + -0.1 358,222 + -0.3 358,260 - -1.0 358,262 - +0.7 358,275 + +1.5 358,276 - +0.5 358,276 - +0.1 358,368 - Echvi_0336 0.29 +0.9 358,615 - -1.3 358,615 - +0.4 358,620 - -0.6 358,727 + -0.1 359,970 - +0.1 359,970 - +0.2 359,974 - +1.0 359,974 - -0.4 360,088 + +0.1 360,117 + -0.3 360,162 + -0.7 360,179 - -0.9 360,180 + +0.9
Or see this region's nucleotide sequence