Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0058 and Echvi_0059 overlap by 4 nucleotides Echvi_0059 and Echvi_0060 are separated by 90 nucleotides
Echvi_0058: Echvi_0058 - Protein of unknown function (DUF3078)., at 55,156 to 56,148
_0058
Echvi_0059: Echvi_0059 - DNA polymerase III, subunit gamma and tau, at 56,145 to 57,865
_0059
Echvi_0060: Echvi_0060 - Predicted nucleoside-diphosphate sugar epimerases, at 57,956 to 59,830
_0060
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 55.170 kb on + strand at 55.170 kb on + strand at 55.187 kb on + strand at 55.257 kb on + strand, within Echvi_0058 at 55.269 kb on + strand, within Echvi_0058 at 55.270 kb on - strand, within Echvi_0058 at 55.300 kb on - strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.314 kb on - strand, within Echvi_0058 at 55.321 kb on - strand, within Echvi_0058 at 55.345 kb on + strand, within Echvi_0058 at 55.368 kb on - strand, within Echvi_0058 at 55.431 kb on - strand, within Echvi_0058 at 55.442 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.589 kb on - strand, within Echvi_0058 at 55.635 kb on + strand, within Echvi_0058 at 55.636 kb on - strand, within Echvi_0058 at 55.640 kb on - strand, within Echvi_0058 at 55.732 kb on + strand, within Echvi_0058 at 55.755 kb on + strand, within Echvi_0058 at 55.767 kb on + strand, within Echvi_0058 at 55.772 kb on + strand, within Echvi_0058 at 55.860 kb on - strand, within Echvi_0058 at 55.887 kb on + strand, within Echvi_0058 at 55.887 kb on + strand, within Echvi_0058 at 55.991 kb on - strand, within Echvi_0058 at 56.013 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.018 kb on - strand, within Echvi_0058 at 56.018 kb on - strand, within Echvi_0058 at 56.028 kb on + strand, within Echvi_0058 at 56.102 kb on + strand at 56.103 kb on - strand at 57.991 kb on + strand at 57.991 kb on + strand at 57.991 kb on + strand at 57.992 kb on - strand at 58.003 kb on - strand at 58.015 kb on + strand at 58.015 kb on + strand at 58.016 kb on - strand at 58.016 kb on - strand at 58.021 kb on + strand at 58.022 kb on - strand at 58.024 kb on + strand at 58.024 kb on + strand at 58.025 kb on - strand at 58.025 kb on - strand at 58.025 kb on - strand at 58.058 kb on + strand at 58.087 kb on - strand at 58.097 kb on - strand at 58.154 kb on + strand, within Echvi_0060 at 58.155 kb on - strand, within Echvi_0060 at 58.155 kb on - strand, within Echvi_0060 at 58.213 kb on + strand, within Echvi_0060 at 58.217 kb on + strand, within Echvi_0060 at 58.386 kb on + strand, within Echvi_0060 at 58.386 kb on + strand, within Echvi_0060 at 58.386 kb on + strand, within Echvi_0060 at 58.414 kb on + strand, within Echvi_0060 at 58.415 kb on - strand, within Echvi_0060 at 58.476 kb on - strand, within Echvi_0060 at 58.537 kb on - strand, within Echvi_0060 at 58.558 kb on - strand, within Echvi_0060 at 58.589 kb on + strand, within Echvi_0060 at 58.589 kb on + strand, within Echvi_0060 at 58.640 kb on + strand, within Echvi_0060 at 58.640 kb on + strand, within Echvi_0060 at 58.641 kb on - strand, within Echvi_0060 at 58.645 kb on + strand, within Echvi_0060 at 58.714 kb on - strand, within Echvi_0060 at 58.755 kb on + strand, within Echvi_0060 at 58.757 kb on + strand, within Echvi_0060 at 58.757 kb on + strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.763 kb on - strand, within Echvi_0060 at 58.786 kb on + strand, within Echvi_0060 at 58.786 kb on + strand, within Echvi_0060 at 58.859 kb on - strand, within Echvi_0060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 55,170 + -3.9 55,170 + -2.0 55,187 + -2.1 55,257 + Echvi_0058 0.10 -1.1 55,269 + Echvi_0058 0.11 -1.3 55,270 - Echvi_0058 0.11 -2.9 55,300 - Echvi_0058 0.15 -2.0 55,313 + Echvi_0058 0.16 -2.5 55,313 + Echvi_0058 0.16 -1.9 55,313 + Echvi_0058 0.16 -1.2 55,313 + Echvi_0058 0.16 -4.3 55,313 + Echvi_0058 0.16 -2.4 55,314 - Echvi_0058 0.16 -2.6 55,321 - Echvi_0058 0.17 -1.5 55,345 + Echvi_0058 0.19 -0.8 55,368 - Echvi_0058 0.21 -2.4 55,431 - Echvi_0058 0.28 -3.8 55,442 - Echvi_0058 0.29 -0.9 55,517 - Echvi_0058 0.36 -1.4 55,517 - Echvi_0058 0.36 -2.3 55,517 - Echvi_0058 0.36 -2.4 55,589 - Echvi_0058 0.44 -2.0 55,635 + Echvi_0058 0.48 -1.3 55,636 - Echvi_0058 0.48 -1.7 55,640 - Echvi_0058 0.49 -1.8 55,732 + Echvi_0058 0.58 -3.2 55,755 + Echvi_0058 0.60 -0.4 55,767 + Echvi_0058 0.62 -3.6 55,772 + Echvi_0058 0.62 +0.8 55,860 - Echvi_0058 0.71 -0.8 55,887 + Echvi_0058 0.74 -1.5 55,887 + Echvi_0058 0.74 -2.8 55,991 - Echvi_0058 0.84 -2.3 56,013 + Echvi_0058 0.86 -1.8 56,017 + Echvi_0058 0.87 -2.2 56,017 + Echvi_0058 0.87 -1.8 56,017 + Echvi_0058 0.87 -2.0 56,017 + Echvi_0058 0.87 -1.3 56,018 - Echvi_0058 0.87 -0.6 56,018 - Echvi_0058 0.87 -0.7 56,028 + Echvi_0058 0.88 -1.6 56,102 + -1.3 56,103 - -1.6 57,991 + -0.2 57,991 + +0.5 57,991 + +0.9 57,992 - +0.7 58,003 - -0.5 58,015 + +2.4 58,015 + +0.9 58,016 - -0.2 58,016 - +1.9 58,021 + -0.8 58,022 - +0.9 58,024 + -0.0 58,024 + +0.7 58,025 - -0.1 58,025 - +0.9 58,025 - +0.4 58,058 + -0.8 58,087 - -0.8 58,097 - +1.0 58,154 + Echvi_0060 0.11 +0.1 58,155 - Echvi_0060 0.11 -0.1 58,155 - Echvi_0060 0.11 -1.4 58,213 + Echvi_0060 0.14 -0.8 58,217 + Echvi_0060 0.14 +1.4 58,386 + Echvi_0060 0.23 -0.4 58,386 + Echvi_0060 0.23 -0.3 58,386 + Echvi_0060 0.23 +0.5 58,414 + Echvi_0060 0.24 -1.0 58,415 - Echvi_0060 0.24 -0.5 58,476 - Echvi_0060 0.28 -0.1 58,537 - Echvi_0060 0.31 +0.5 58,558 - Echvi_0060 0.32 +0.6 58,589 + Echvi_0060 0.34 +1.1 58,589 + Echvi_0060 0.34 +0.1 58,640 + Echvi_0060 0.36 +0.1 58,640 + Echvi_0060 0.36 -0.3 58,641 - Echvi_0060 0.37 +0.0 58,645 + Echvi_0060 0.37 +0.2 58,714 - Echvi_0060 0.40 +0.1 58,755 + Echvi_0060 0.43 -0.6 58,757 + Echvi_0060 0.43 +0.1 58,757 + Echvi_0060 0.43 -0.3 58,758 - Echvi_0060 0.43 -0.3 58,758 - Echvi_0060 0.43 +0.2 58,758 - Echvi_0060 0.43 +1.6 58,758 - Echvi_0060 0.43 -1.3 58,758 - Echvi_0060 0.43 -0.4 58,763 - Echvi_0060 0.43 -0.7 58,786 + Echvi_0060 0.44 -0.3 58,786 + Echvi_0060 0.44 +1.9 58,859 - Echvi_0060 0.48 +0.5
Or see this region's nucleotide sequence