Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4393 and EX28DRAFT_4394 are separated by 48 nucleotides EX28DRAFT_4394 and EX28DRAFT_4395 are separated by 111 nucleotides EX28DRAFT_4395 and EX28DRAFT_4396 are separated by 112 nucleotides
EX28DRAFT_4393: EX28DRAFT_4393 - Di- and tricarboxylate transporters, at 56,150 to 57,454
_4393
EX28DRAFT_4394: EX28DRAFT_4394 - triosephosphate isomerase (EC 5.3.1.1), at 57,503 to 58,270
_4394
EX28DRAFT_4395: EX28DRAFT_4395 - Protein of unknown function (DUF1454), at 58,382 to 58,978
_4395
EX28DRAFT_4396: EX28DRAFT_4396 - Predicted membrane protein, at 59,091 to 59,510
_4396
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.684 kb on + strand, within EX28DRAFT_4393 at 56.702 kb on + strand, within EX28DRAFT_4393 at 56.703 kb on - strand, within EX28DRAFT_4393 at 57.016 kb on + strand, within EX28DRAFT_4393 at 57.017 kb on - strand, within EX28DRAFT_4393 at 57.081 kb on + strand, within EX28DRAFT_4393 at 57.082 kb on - strand, within EX28DRAFT_4393 at 57.103 kb on + strand, within EX28DRAFT_4393 at 57.103 kb on + strand, within EX28DRAFT_4393 at 57.155 kb on - strand, within EX28DRAFT_4393 at 57.178 kb on + strand, within EX28DRAFT_4393 at 57.178 kb on + strand, within EX28DRAFT_4393 at 57.179 kb on - strand, within EX28DRAFT_4393 at 57.206 kb on + strand, within EX28DRAFT_4393 at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.399 kb on - strand at 57.399 kb on - strand at 57.423 kb on - strand at 57.441 kb on + strand at 57.441 kb on + strand at 57.453 kb on - strand at 57.464 kb on - strand at 57.505 kb on - strand at 58.409 kb on + strand at 58.501 kb on - strand, within EX28DRAFT_4395 at 58.501 kb on - strand, within EX28DRAFT_4395 at 58.576 kb on + strand, within EX28DRAFT_4395 at 58.602 kb on + strand, within EX28DRAFT_4395 at 58.603 kb on - strand, within EX28DRAFT_4395 at 58.603 kb on - strand, within EX28DRAFT_4395 at 58.706 kb on - strand, within EX28DRAFT_4395 at 59.012 kb on - strand at 59.070 kb on + strand at 59.070 kb on + strand at 59.071 kb on - strand at 59.078 kb on + strand at 59.078 kb on + strand at 59.078 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.098 kb on + strand at 59.098 kb on + strand at 59.098 kb on + strand at 59.099 kb on - strand at 59.099 kb on - strand at 59.202 kb on + strand, within EX28DRAFT_4396 at 59.202 kb on + strand, within EX28DRAFT_4396 at 59.203 kb on - strand, within EX28DRAFT_4396 at 59.203 kb on - strand, within EX28DRAFT_4396
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 56,684 + EX28DRAFT_4393 0.41 -0.1 56,702 + EX28DRAFT_4393 0.42 -0.5 56,703 - EX28DRAFT_4393 0.42 +0.5 57,016 + EX28DRAFT_4393 0.66 +0.1 57,017 - EX28DRAFT_4393 0.66 +0.0 57,081 + EX28DRAFT_4393 0.71 -0.7 57,082 - EX28DRAFT_4393 0.71 +0.4 57,103 + EX28DRAFT_4393 0.73 -0.6 57,103 + EX28DRAFT_4393 0.73 -0.2 57,155 - EX28DRAFT_4393 0.77 +1.0 57,178 + EX28DRAFT_4393 0.79 +1.9 57,178 + EX28DRAFT_4393 0.79 +0.6 57,179 - EX28DRAFT_4393 0.79 -0.1 57,206 + EX28DRAFT_4393 0.81 +0.3 57,398 + -0.4 57,398 + +0.0 57,398 + -1.4 57,398 + -0.9 57,399 - +0.3 57,399 - -0.3 57,423 - +0.4 57,441 + -0.6 57,441 + -0.3 57,453 - +0.3 57,464 - +0.2 57,505 - -0.5 58,409 + +0.3 58,501 - EX28DRAFT_4395 0.20 +0.4 58,501 - EX28DRAFT_4395 0.20 -0.3 58,576 + EX28DRAFT_4395 0.32 +0.2 58,602 + EX28DRAFT_4395 0.37 -1.0 58,603 - EX28DRAFT_4395 0.37 -0.2 58,603 - EX28DRAFT_4395 0.37 +0.1 58,706 - EX28DRAFT_4395 0.54 +0.6 59,012 - -0.3 59,070 + +0.0 59,070 + +0.4 59,071 - -1.6 59,078 + +0.1 59,078 + +0.2 59,078 + +0.3 59,088 + +1.5 59,088 + +0.5 59,088 + +0.3 59,088 + +0.1 59,088 + +0.0 59,088 + -1.0 59,088 + -2.5 59,089 - +0.1 59,089 - -0.1 59,089 - +0.9 59,089 - +0.1 59,098 + -0.1 59,098 + +0.4 59,098 + +0.6 59,099 - +0.2 59,099 - -0.1 59,202 + EX28DRAFT_4396 0.26 +0.1 59,202 + EX28DRAFT_4396 0.26 -0.2 59,203 - EX28DRAFT_4396 0.27 +0.7 59,203 - EX28DRAFT_4396 0.27 -0.1
Or see this region's nucleotide sequence