Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4206 and EX28DRAFT_4207 overlap by 8 nucleotides EX28DRAFT_4207 and EX28DRAFT_4208 overlap by 4 nucleotides EX28DRAFT_4208 and EX28DRAFT_4209 are separated by 9 nucleotides
EX28DRAFT_4206: EX28DRAFT_4206 - Uncharacterized enzyme of phosphonate metabolism, at 13,656 to 14,720
_4206
EX28DRAFT_4207: EX28DRAFT_4207 - Uncharacterized enzyme of phosphonate metabolism, at 14,713 to 15,558
_4207
EX28DRAFT_4208: EX28DRAFT_4208 - phosphonate C-P lyase system protein PhnK, at 15,555 to 16,310
_4208
EX28DRAFT_4209: EX28DRAFT_4209 - phosphonate C-P lyase system protein PhnL, at 16,320 to 17,000
_4209
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 13.778 kb on - strand, within EX28DRAFT_4206 at 13.778 kb on - strand, within EX28DRAFT_4206 at 13.870 kb on + strand, within EX28DRAFT_4206 at 13.870 kb on + strand, within EX28DRAFT_4206 at 13.870 kb on + strand, within EX28DRAFT_4206 at 13.870 kb on + strand, within EX28DRAFT_4206 at 13.871 kb on - strand, within EX28DRAFT_4206 at 13.871 kb on - strand, within EX28DRAFT_4206 at 13.871 kb on - strand, within EX28DRAFT_4206 at 13.871 kb on - strand, within EX28DRAFT_4206 at 13.913 kb on + strand, within EX28DRAFT_4206 at 13.982 kb on + strand, within EX28DRAFT_4206 at 14.026 kb on - strand, within EX28DRAFT_4206 at 14.481 kb on + strand, within EX28DRAFT_4206 at 14.656 kb on - strand at 14.723 kb on + strand at 14.724 kb on - strand at 14.724 kb on - strand at 14.787 kb on + strand at 14.788 kb on - strand at 14.788 kb on - strand at 14.992 kb on - strand, within EX28DRAFT_4207 at 14.992 kb on - strand, within EX28DRAFT_4207 at 15.223 kb on + strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.254 kb on - strand, within EX28DRAFT_4207 at 15.353 kb on - strand, within EX28DRAFT_4207 at 15.367 kb on + strand, within EX28DRAFT_4207 at 15.460 kb on + strand, within EX28DRAFT_4207 at 15.460 kb on + strand, within EX28DRAFT_4207 at 15.578 kb on + strand at 15.578 kb on + strand at 15.742 kb on - strand, within EX28DRAFT_4208 at 16.055 kb on + strand, within EX28DRAFT_4208 at 16.309 kb on - strand at 16.309 kb on - strand at 16.331 kb on - strand at 16.331 kb on - strand at 16.339 kb on + strand at 16.340 kb on - strand at 16.340 kb on - strand at 16.343 kb on + strand at 16.344 kb on - strand at 16.344 kb on - strand at 16.394 kb on + strand, within EX28DRAFT_4209 at 16.395 kb on - strand, within EX28DRAFT_4209 at 16.491 kb on + strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 13,778 - EX28DRAFT_4206 0.11 +0.1 13,778 - EX28DRAFT_4206 0.11 +1.1 13,870 + EX28DRAFT_4206 0.20 -0.8 13,870 + EX28DRAFT_4206 0.20 +0.3 13,870 + EX28DRAFT_4206 0.20 +0.6 13,870 + EX28DRAFT_4206 0.20 +0.1 13,871 - EX28DRAFT_4206 0.20 -1.9 13,871 - EX28DRAFT_4206 0.20 -0.4 13,871 - EX28DRAFT_4206 0.20 +0.5 13,871 - EX28DRAFT_4206 0.20 -0.0 13,913 + EX28DRAFT_4206 0.24 -0.1 13,982 + EX28DRAFT_4206 0.31 +0.1 14,026 - EX28DRAFT_4206 0.35 +0.9 14,481 + EX28DRAFT_4206 0.77 +0.0 14,656 - -0.3 14,723 + -0.1 14,724 - -2.6 14,724 - +0.5 14,787 + +0.9 14,788 - +0.8 14,788 - -0.9 14,992 - EX28DRAFT_4207 0.33 -0.5 14,992 - EX28DRAFT_4207 0.33 -0.6 15,223 + EX28DRAFT_4207 0.60 -0.4 15,224 - EX28DRAFT_4207 0.60 -1.5 15,224 - EX28DRAFT_4207 0.60 -0.1 15,224 - EX28DRAFT_4207 0.60 -0.1 15,224 - EX28DRAFT_4207 0.60 +0.6 15,254 - EX28DRAFT_4207 0.64 -0.2 15,353 - EX28DRAFT_4207 0.76 -0.1 15,367 + EX28DRAFT_4207 0.77 -0.3 15,460 + EX28DRAFT_4207 0.88 +0.5 15,460 + EX28DRAFT_4207 0.88 -0.4 15,578 + +0.3 15,578 + +0.6 15,742 - EX28DRAFT_4208 0.25 +0.4 16,055 + EX28DRAFT_4208 0.66 +0.4 16,309 - +0.1 16,309 - +0.0 16,331 - -0.4 16,331 - +0.3 16,339 + -0.4 16,340 - -0.1 16,340 - +0.4 16,343 + -0.1 16,344 - +0.2 16,344 - +0.2 16,394 + EX28DRAFT_4209 0.11 -0.5 16,395 - EX28DRAFT_4209 0.11 +0.5 16,491 + EX28DRAFT_4209 0.25 +0.4 16,492 - EX28DRAFT_4209 0.25 -0.6 16,492 - EX28DRAFT_4209 0.25 +0.8
Or see this region's nucleotide sequence