Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4108 and EX28DRAFT_4109 are separated by 145 nucleotides EX28DRAFT_4109 and EX28DRAFT_4110 are separated by 4 nucleotides EX28DRAFT_4110 and EX28DRAFT_4111 are separated by 72 nucleotides
EX28DRAFT_4108: EX28DRAFT_4108 - Predicted permease, at 79,800 to 80,849
_4108
EX28DRAFT_4109: EX28DRAFT_4109 - Arabinose efflux permease, at 80,995 to 82,212
_4109
EX28DRAFT_4110: EX28DRAFT_4110 - hypothetical protein, at 82,217 to 82,774
_4110
EX28DRAFT_4111: EX28DRAFT_4111 - conserved hypothetical integral membrane protein, at 82,847 to 83,512
_4111
Position (kb) 80
81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.033 kb on + strand, within EX28DRAFT_4108 at 80.034 kb on - strand, within EX28DRAFT_4108 at 80.034 kb on - strand, within EX28DRAFT_4108 at 80.034 kb on - strand, within EX28DRAFT_4108 at 80.074 kb on + strand, within EX28DRAFT_4108 at 80.075 kb on - strand, within EX28DRAFT_4108 at 80.084 kb on + strand, within EX28DRAFT_4108 at 80.146 kb on + strand, within EX28DRAFT_4108 at 80.147 kb on - strand, within EX28DRAFT_4108 at 80.200 kb on - strand, within EX28DRAFT_4108 at 80.200 kb on - strand, within EX28DRAFT_4108 at 80.263 kb on + strand, within EX28DRAFT_4108 at 80.264 kb on - strand, within EX28DRAFT_4108 at 80.264 kb on - strand, within EX28DRAFT_4108 at 80.341 kb on + strand, within EX28DRAFT_4108 at 80.341 kb on + strand, within EX28DRAFT_4108 at 80.342 kb on - strand, within EX28DRAFT_4108 at 80.370 kb on - strand, within EX28DRAFT_4108 at 80.370 kb on - strand, within EX28DRAFT_4108 at 80.370 kb on - strand, within EX28DRAFT_4108 at 80.443 kb on + strand, within EX28DRAFT_4108 at 80.496 kb on - strand, within EX28DRAFT_4108 at 80.496 kb on - strand, within EX28DRAFT_4108 at 80.504 kb on + strand, within EX28DRAFT_4108 at 80.560 kb on + strand, within EX28DRAFT_4108 at 80.560 kb on + strand, within EX28DRAFT_4108 at 80.708 kb on + strand, within EX28DRAFT_4108 at 80.708 kb on + strand, within EX28DRAFT_4108 at 80.750 kb on + strand at 80.750 kb on + strand at 80.750 kb on + strand at 80.860 kb on + strand at 80.863 kb on + strand at 80.864 kb on - strand at 80.864 kb on - strand at 80.877 kb on - strand at 80.882 kb on + strand at 80.883 kb on - strand at 80.883 kb on - strand at 80.883 kb on - strand at 80.941 kb on + strand at 80.957 kb on + strand at 81.082 kb on + strand at 81.083 kb on - strand at 81.083 kb on - strand at 81.121 kb on + strand, within EX28DRAFT_4109 at 81.121 kb on + strand, within EX28DRAFT_4109 at 81.170 kb on + strand, within EX28DRAFT_4109 at 81.182 kb on - strand, within EX28DRAFT_4109 at 81.293 kb on - strand, within EX28DRAFT_4109 at 81.293 kb on - strand, within EX28DRAFT_4109 at 81.473 kb on - strand, within EX28DRAFT_4109 at 81.727 kb on + strand, within EX28DRAFT_4109 at 81.774 kb on + strand, within EX28DRAFT_4109 at 81.870 kb on - strand, within EX28DRAFT_4109 at 81.983 kb on + strand, within EX28DRAFT_4109 at 82.027 kb on + strand, within EX28DRAFT_4109 at 82.027 kb on + strand, within EX28DRAFT_4109 at 82.028 kb on - strand, within EX28DRAFT_4109 at 82.044 kb on + strand, within EX28DRAFT_4109 at 82.111 kb on + strand at 82.111 kb on + strand at 82.111 kb on + strand at 82.111 kb on + strand at 82.112 kb on - strand at 82.237 kb on + strand at 82.238 kb on - strand at 82.418 kb on - strand, within EX28DRAFT_4110 at 82.712 kb on - strand, within EX28DRAFT_4110 at 82.756 kb on - strand at 82.756 kb on - strand at 82.760 kb on - strand at 82.880 kb on - strand at 82.904 kb on - strand at 82.965 kb on + strand, within EX28DRAFT_4111 at 83.050 kb on + strand, within EX28DRAFT_4111 at 83.165 kb on - strand, within EX28DRAFT_4111
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 80,033 + EX28DRAFT_4108 0.22 -0.5 80,034 - EX28DRAFT_4108 0.22 -0.0 80,034 - EX28DRAFT_4108 0.22 -0.4 80,034 - EX28DRAFT_4108 0.22 +0.6 80,074 + EX28DRAFT_4108 0.26 -1.4 80,075 - EX28DRAFT_4108 0.26 +0.0 80,084 + EX28DRAFT_4108 0.27 +0.3 80,146 + EX28DRAFT_4108 0.33 -0.5 80,147 - EX28DRAFT_4108 0.33 -0.5 80,200 - EX28DRAFT_4108 0.38 -1.4 80,200 - EX28DRAFT_4108 0.38 +0.1 80,263 + EX28DRAFT_4108 0.44 +0.6 80,264 - EX28DRAFT_4108 0.44 -0.0 80,264 - EX28DRAFT_4108 0.44 -0.2 80,341 + EX28DRAFT_4108 0.52 +0.2 80,341 + EX28DRAFT_4108 0.52 -0.1 80,342 - EX28DRAFT_4108 0.52 -0.1 80,370 - EX28DRAFT_4108 0.54 +0.1 80,370 - EX28DRAFT_4108 0.54 +0.2 80,370 - EX28DRAFT_4108 0.54 -2.4 80,443 + EX28DRAFT_4108 0.61 +0.9 80,496 - EX28DRAFT_4108 0.66 +0.1 80,496 - EX28DRAFT_4108 0.66 +0.2 80,504 + EX28DRAFT_4108 0.67 +0.0 80,560 + EX28DRAFT_4108 0.72 +0.0 80,560 + EX28DRAFT_4108 0.72 -3.3 80,708 + EX28DRAFT_4108 0.86 +0.8 80,708 + EX28DRAFT_4108 0.86 -0.3 80,750 + -0.3 80,750 + -0.9 80,750 + +0.1 80,860 + -1.0 80,863 + +0.3 80,864 - +0.1 80,864 - -0.4 80,877 - +0.3 80,882 + -0.2 80,883 - +0.2 80,883 - -0.2 80,883 - +0.0 80,941 + +0.0 80,957 + +0.5 81,082 + +0.1 81,083 - -0.2 81,083 - +0.9 81,121 + EX28DRAFT_4109 0.10 +0.1 81,121 + EX28DRAFT_4109 0.10 -0.3 81,170 + EX28DRAFT_4109 0.14 -1.5 81,182 - EX28DRAFT_4109 0.15 +0.1 81,293 - EX28DRAFT_4109 0.24 -0.0 81,293 - EX28DRAFT_4109 0.24 -0.2 81,473 - EX28DRAFT_4109 0.39 -1.8 81,727 + EX28DRAFT_4109 0.60 +0.2 81,774 + EX28DRAFT_4109 0.64 -0.6 81,870 - EX28DRAFT_4109 0.72 +0.1 81,983 + EX28DRAFT_4109 0.81 -0.2 82,027 + EX28DRAFT_4109 0.85 -0.2 82,027 + EX28DRAFT_4109 0.85 -0.7 82,028 - EX28DRAFT_4109 0.85 -0.2 82,044 + EX28DRAFT_4109 0.86 -0.6 82,111 + -0.2 82,111 + +0.2 82,111 + +0.3 82,111 + +0.5 82,112 - -0.8 82,237 + -3.5 82,238 - -0.9 82,418 - EX28DRAFT_4110 0.36 -0.1 82,712 - EX28DRAFT_4110 0.89 +0.0 82,756 - -0.7 82,756 - -1.1 82,760 - +0.2 82,880 - -0.3 82,904 - +0.4 82,965 + EX28DRAFT_4111 0.18 -1.1 83,050 + EX28DRAFT_4111 0.30 -0.4 83,165 - EX28DRAFT_4111 0.48 -1.0
Or see this region's nucleotide sequence