Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4063

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4062 and EX28DRAFT_4063 are separated by 214 nucleotidesEX28DRAFT_4063 and EX28DRAFT_4064 overlap by 35 nucleotidesEX28DRAFT_4064 and EX28DRAFT_4065 are separated by 96 nucleotides EX28DRAFT_4062: EX28DRAFT_4062 - Protein involved in catabolism of external DNA, at 37,388 to 38,230 _4062 EX28DRAFT_4063: EX28DRAFT_4063 - Zn-dependent oligopeptidases, at 38,445 to 40,487 _4063 EX28DRAFT_4064: EX28DRAFT_4064 - Putative SAM-dependent methyltransferase, at 40,453 to 41,247 _4064 EX28DRAFT_4065: EX28DRAFT_4065 - Universal stress protein UspA and related nucleotide-binding proteins, at 41,344 to 41,781 _4065 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1at 37.612 kb on + strand, within EX28DRAFT_4062at 37.657 kb on - strand, within EX28DRAFT_4062at 37.657 kb on - strand, within EX28DRAFT_4062at 37.681 kb on - strand, within EX28DRAFT_4062at 37.989 kb on + strand, within EX28DRAFT_4062at 37.989 kb on + strand, within EX28DRAFT_4062at 37.990 kb on - strand, within EX28DRAFT_4062at 37.990 kb on - strand, within EX28DRAFT_4062at 38.049 kb on + strand, within EX28DRAFT_4062at 38.253 kb on - strandat 38.258 kb on + strandat 38.293 kb on - strandat 38.311 kb on - strandat 38.311 kb on - strandat 38.311 kb on - strandat 38.312 kb on + strandat 38.313 kb on - strandat 38.365 kb on + strandat 38.366 kb on - strandat 38.371 kb on + strandat 38.391 kb on + strandat 38.392 kb on - strandat 38.392 kb on - strandat 38.424 kb on + strandat 38.424 kb on + strandat 38.800 kb on - strand, within EX28DRAFT_4063at 38.940 kb on + strand, within EX28DRAFT_4063at 39.099 kb on + strand, within EX28DRAFT_4063at 39.100 kb on - strand, within EX28DRAFT_4063at 39.151 kb on - strand, within EX28DRAFT_4063at 39.159 kb on + strand, within EX28DRAFT_4063at 39.160 kb on - strand, within EX28DRAFT_4063at 39.454 kb on - strand, within EX28DRAFT_4063at 39.511 kb on - strand, within EX28DRAFT_4063at 39.564 kb on + strand, within EX28DRAFT_4063at 39.564 kb on + strand, within EX28DRAFT_4063at 39.565 kb on - strand, within EX28DRAFT_4063at 39.678 kb on + strand, within EX28DRAFT_4063at 39.738 kb on - strand, within EX28DRAFT_4063at 39.783 kb on - strand, within EX28DRAFT_4063at 39.840 kb on - strand, within EX28DRAFT_4063at 39.875 kb on + strand, within EX28DRAFT_4063at 39.876 kb on - strand, within EX28DRAFT_4063at 39.876 kb on - strand, within EX28DRAFT_4063at 39.876 kb on - strand, within EX28DRAFT_4063at 40.008 kb on + strand, within EX28DRAFT_4063at 40.185 kb on - strand, within EX28DRAFT_4063at 40.279 kb on - strand, within EX28DRAFT_4063at 40.285 kb on - strandat 40.493 kb on - strandat 40.508 kb on + strandat 40.508 kb on + strandat 40.508 kb on + strandat 40.509 kb on - strandat 40.512 kb on - strandat 40.756 kb on + strand, within EX28DRAFT_4064at 41.000 kb on - strand, within EX28DRAFT_4064at 41.000 kb on - strand, within EX28DRAFT_4064at 41.011 kb on - strand, within EX28DRAFT_4064at 41.011 kb on - strand, within EX28DRAFT_4064at 41.022 kb on + strand, within EX28DRAFT_4064at 41.158 kb on + strand, within EX28DRAFT_4064at 41.294 kb on + strandat 41.294 kb on + strandat 41.295 kb on - strandat 41.337 kb on - strandat 41.345 kb on + strandat 41.345 kb on + strandat 41.345 kb on + strandat 41.346 kb on - strandat 41.478 kb on - strand, within EX28DRAFT_4065

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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37,612 + EX28DRAFT_4062 0.27 +0.1
37,657 - EX28DRAFT_4062 0.32 +0.3
37,657 - EX28DRAFT_4062 0.32 -0.1
37,681 - EX28DRAFT_4062 0.35 -0.2
37,989 + EX28DRAFT_4062 0.71 -0.5
37,989 + EX28DRAFT_4062 0.71 -0.5
37,990 - EX28DRAFT_4062 0.71 +1.0
37,990 - EX28DRAFT_4062 0.71 +0.2
38,049 + EX28DRAFT_4062 0.78 -0.3
38,253 - -1.6
38,258 + +0.6
38,293 - +0.1
38,311 - -0.2
38,311 - -0.2
38,311 - -0.2
38,312 + -0.1
38,313 - -1.0
38,365 + +0.9
38,366 - -0.3
38,371 + +1.3
38,391 + +0.7
38,392 - -0.2
38,392 - +0.1
38,424 + -1.5
38,424 + +0.5
38,800 - EX28DRAFT_4063 0.17 -1.1
38,940 + EX28DRAFT_4063 0.24 +0.4
39,099 + EX28DRAFT_4063 0.32 -2.2
39,100 - EX28DRAFT_4063 0.32 -1.4
39,151 - EX28DRAFT_4063 0.35 -0.6
39,159 + EX28DRAFT_4063 0.35 -0.2
39,160 - EX28DRAFT_4063 0.35 -0.9
39,454 - EX28DRAFT_4063 0.49 -0.8
39,511 - EX28DRAFT_4063 0.52 -1.3
39,564 + EX28DRAFT_4063 0.55 -0.6
39,564 + EX28DRAFT_4063 0.55 -0.4
39,565 - EX28DRAFT_4063 0.55 +0.3
39,678 + EX28DRAFT_4063 0.60 -0.9
39,738 - EX28DRAFT_4063 0.63 -1.4
39,783 - EX28DRAFT_4063 0.65 -0.2
39,840 - EX28DRAFT_4063 0.68 -1.3
39,875 + EX28DRAFT_4063 0.70 -0.1
39,876 - EX28DRAFT_4063 0.70 -3.0
39,876 - EX28DRAFT_4063 0.70 -2.7
39,876 - EX28DRAFT_4063 0.70 -3.1
40,008 + EX28DRAFT_4063 0.77 -0.5
40,185 - EX28DRAFT_4063 0.85 -1.0
40,279 - EX28DRAFT_4063 0.90 -0.8
40,285 - -1.7
40,493 - +0.8
40,508 + -1.2
40,508 + +1.6
40,508 + +1.1
40,509 - -1.1
40,512 - -1.0
40,756 + EX28DRAFT_4064 0.38 -0.1
41,000 - EX28DRAFT_4064 0.69 +0.5
41,000 - EX28DRAFT_4064 0.69 -0.6
41,011 - EX28DRAFT_4064 0.70 -0.8
41,011 - EX28DRAFT_4064 0.70 -1.6
41,022 + EX28DRAFT_4064 0.72 +0.0
41,158 + EX28DRAFT_4064 0.89 -1.3
41,294 + -0.1
41,294 + +0.4
41,295 - -0.2
41,337 - -0.3
41,345 + +0.0
41,345 + -1.0
41,345 + -0.1
41,346 - -1.0
41,478 - EX28DRAFT_4065 0.31 -0.9

Or see this region's nucleotide sequence