Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4041

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4039 and EX28DRAFT_4040 overlap by 8 nucleotidesEX28DRAFT_4040 and EX28DRAFT_4041 overlap by 4 nucleotidesEX28DRAFT_4041 and EX28DRAFT_4042 are separated by 175 nucleotidesEX28DRAFT_4042 and EX28DRAFT_4043 are separated by 11 nucleotides EX28DRAFT_4039: EX28DRAFT_4039 - cellulose synthase operon protein YhjU, at 3,459 to 5,138 _4039 EX28DRAFT_4040: EX28DRAFT_4040 - celllulose biosynthesis operon protein BcsF/YhjT, at 5,131 to 5,325 _4040 EX28DRAFT_4041: EX28DRAFT_4041 - cellulose biosynthesis protein BcsE, at 5,322 to 6,884 _4041 EX28DRAFT_4042: EX28DRAFT_4042 - Protein of unknown function (DUF2629), at 7,060 to 7,248 _4042 EX28DRAFT_4043: EX28DRAFT_4043 - cellulose synthase operon protein YhjQ, at 7,260 to 8,012 _4043 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.472 kb on + strand, within EX28DRAFT_4039at 4.472 kb on + strand, within EX28DRAFT_4039at 4.704 kb on - strand, within EX28DRAFT_4039at 4.704 kb on - strand, within EX28DRAFT_4039at 4.825 kb on + strand, within EX28DRAFT_4039at 4.825 kb on + strand, within EX28DRAFT_4039at 4.866 kb on - strand, within EX28DRAFT_4039at 4.892 kb on + strand, within EX28DRAFT_4039at 4.893 kb on - strand, within EX28DRAFT_4039at 4.923 kb on + strand, within EX28DRAFT_4039at 4.924 kb on - strand, within EX28DRAFT_4039at 4.924 kb on - strand, within EX28DRAFT_4039at 4.924 kb on - strand, within EX28DRAFT_4039at 4.926 kb on - strand, within EX28DRAFT_4039at 4.951 kb on - strand, within EX28DRAFT_4039at 4.951 kb on - strand, within EX28DRAFT_4039at 5.024 kb on - strandat 5.060 kb on - strandat 5.090 kb on - strandat 5.120 kb on + strandat 5.121 kb on - strandat 5.122 kb on + strandat 5.122 kb on + strandat 5.123 kb on - strandat 5.127 kb on - strandat 5.133 kb on - strandat 5.133 kb on - strandat 5.133 kb on - strandat 5.133 kb on - strandat 5.192 kb on - strand, within EX28DRAFT_4040at 5.192 kb on - strand, within EX28DRAFT_4040at 5.195 kb on + strand, within EX28DRAFT_4040at 5.195 kb on + strand, within EX28DRAFT_4040at 5.206 kb on - strand, within EX28DRAFT_4040at 5.208 kb on + strand, within EX28DRAFT_4040at 5.235 kb on + strand, within EX28DRAFT_4040at 5.242 kb on + strand, within EX28DRAFT_4040at 5.258 kb on + strand, within EX28DRAFT_4040at 5.259 kb on - strand, within EX28DRAFT_4040at 5.262 kb on - strand, within EX28DRAFT_4040at 5.262 kb on - strand, within EX28DRAFT_4040at 5.262 kb on - strand, within EX28DRAFT_4040at 5.294 kb on - strand, within EX28DRAFT_4040at 5.501 kb on + strand, within EX28DRAFT_4041at 5.501 kb on + strand, within EX28DRAFT_4041at 5.505 kb on - strand, within EX28DRAFT_4041at 5.537 kb on + strand, within EX28DRAFT_4041at 5.667 kb on + strand, within EX28DRAFT_4041at 5.667 kb on + strand, within EX28DRAFT_4041at 5.668 kb on - strand, within EX28DRAFT_4041at 5.847 kb on - strand, within EX28DRAFT_4041at 5.939 kb on + strand, within EX28DRAFT_4041at 5.990 kb on + strand, within EX28DRAFT_4041at 5.990 kb on + strand, within EX28DRAFT_4041at 6.039 kb on + strand, within EX28DRAFT_4041at 6.040 kb on - strand, within EX28DRAFT_4041at 6.192 kb on + strand, within EX28DRAFT_4041at 6.203 kb on + strand, within EX28DRAFT_4041at 6.204 kb on - strand, within EX28DRAFT_4041at 6.284 kb on + strand, within EX28DRAFT_4041at 6.355 kb on + strand, within EX28DRAFT_4041at 6.355 kb on + strand, within EX28DRAFT_4041at 6.355 kb on + strand, within EX28DRAFT_4041at 6.414 kb on + strand, within EX28DRAFT_4041at 6.415 kb on - strand, within EX28DRAFT_4041at 6.437 kb on + strand, within EX28DRAFT_4041at 6.491 kb on + strand, within EX28DRAFT_4041at 6.517 kb on - strand, within EX28DRAFT_4041at 6.571 kb on - strand, within EX28DRAFT_4041at 6.626 kb on + strand, within EX28DRAFT_4041at 6.693 kb on - strand, within EX28DRAFT_4041at 6.791 kb on + strandat 6.791 kb on + strandat 6.803 kb on + strandat 6.804 kb on - strandat 6.866 kb on + strandat 6.908 kb on + strandat 6.909 kb on - strandat 6.909 kb on - strandat 6.915 kb on - strandat 6.938 kb on + strandat 6.945 kb on - strandat 6.951 kb on - strandat 6.979 kb on - strandat 6.979 kb on - strandat 6.985 kb on + strandat 6.986 kb on - strandat 6.986 kb on - strandat 6.986 kb on - strandat 7.065 kb on + strandat 7.166 kb on - strand, within EX28DRAFT_4042at 7.246 kb on + strandat 7.246 kb on + strandat 7.345 kb on + strand, within EX28DRAFT_4043at 7.346 kb on - strand, within EX28DRAFT_4043at 7.346 kb on - strand, within EX28DRAFT_4043at 7.394 kb on + strand, within EX28DRAFT_4043at 7.394 kb on + strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.454 kb on + strand, within EX28DRAFT_4043at 7.483 kb on - strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.611 kb on + strand, within EX28DRAFT_4043at 7.611 kb on + strand, within EX28DRAFT_4043at 7.612 kb on - strand, within EX28DRAFT_4043at 7.685 kb on + strand, within EX28DRAFT_4043at 7.687 kb on + strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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4,472 + EX28DRAFT_4039 0.60 +1.0
4,472 + EX28DRAFT_4039 0.60 +0.9
4,704 - EX28DRAFT_4039 0.74 +1.8
4,704 - EX28DRAFT_4039 0.74 +0.4
4,825 + EX28DRAFT_4039 0.81 +0.7
4,825 + EX28DRAFT_4039 0.81 +1.0
4,866 - EX28DRAFT_4039 0.84 +0.4
4,892 + EX28DRAFT_4039 0.85 +0.4
4,893 - EX28DRAFT_4039 0.85 +1.1
4,923 + EX28DRAFT_4039 0.87 +1.0
4,924 - EX28DRAFT_4039 0.87 +1.4
4,924 - EX28DRAFT_4039 0.87 -0.3
4,924 - EX28DRAFT_4039 0.87 +1.3
4,926 - EX28DRAFT_4039 0.87 -0.5
4,951 - EX28DRAFT_4039 0.89 +0.7
4,951 - EX28DRAFT_4039 0.89 +0.7
5,024 - +0.2
5,060 - +0.5
5,090 - +1.1
5,120 + +1.5
5,121 - +0.7
5,122 + +1.2
5,122 + +1.0
5,123 - +0.7
5,127 - -0.6
5,133 - +1.6
5,133 - +0.9
5,133 - +0.4
5,133 - +1.9
5,192 - EX28DRAFT_4040 0.31 +1.6
5,192 - EX28DRAFT_4040 0.31 +0.8
5,195 + EX28DRAFT_4040 0.33 +0.9
5,195 + EX28DRAFT_4040 0.33 +0.9
5,206 - EX28DRAFT_4040 0.38 +0.6
5,208 + EX28DRAFT_4040 0.39 +2.0
5,235 + EX28DRAFT_4040 0.53 -0.3
5,242 + EX28DRAFT_4040 0.57 +0.6
5,258 + EX28DRAFT_4040 0.65 +0.9
5,259 - EX28DRAFT_4040 0.66 -0.1
5,262 - EX28DRAFT_4040 0.67 +0.8
5,262 - EX28DRAFT_4040 0.67 +0.8
5,262 - EX28DRAFT_4040 0.67 +2.2
5,294 - EX28DRAFT_4040 0.84 -2.0
5,501 + EX28DRAFT_4041 0.11 +1.0
5,501 + EX28DRAFT_4041 0.11 +0.5
5,505 - EX28DRAFT_4041 0.12 +0.4
5,537 + EX28DRAFT_4041 0.14 -0.5
5,667 + EX28DRAFT_4041 0.22 +1.2
5,667 + EX28DRAFT_4041 0.22 +0.8
5,668 - EX28DRAFT_4041 0.22 +1.0
5,847 - EX28DRAFT_4041 0.34 +0.5
5,939 + EX28DRAFT_4041 0.39 +1.1
5,990 + EX28DRAFT_4041 0.43 +0.5
5,990 + EX28DRAFT_4041 0.43 +0.1
6,039 + EX28DRAFT_4041 0.46 +0.1
6,040 - EX28DRAFT_4041 0.46 -0.1
6,192 + EX28DRAFT_4041 0.56 +1.5
6,203 + EX28DRAFT_4041 0.56 +0.1
6,204 - EX28DRAFT_4041 0.56 +0.8
6,284 + EX28DRAFT_4041 0.62 +0.2
6,355 + EX28DRAFT_4041 0.66 +0.8
6,355 + EX28DRAFT_4041 0.66 +0.9
6,355 + EX28DRAFT_4041 0.66 +0.4
6,414 + EX28DRAFT_4041 0.70 +1.0
6,415 - EX28DRAFT_4041 0.70 +0.8
6,437 + EX28DRAFT_4041 0.71 +0.9
6,491 + EX28DRAFT_4041 0.75 +0.9
6,517 - EX28DRAFT_4041 0.76 +1.8
6,571 - EX28DRAFT_4041 0.80 +1.5
6,626 + EX28DRAFT_4041 0.83 +1.1
6,693 - EX28DRAFT_4041 0.88 +1.0
6,791 + -0.3
6,791 + +0.3
6,803 + +1.1
6,804 - +1.2
6,866 + -2.5
6,908 + +1.2
6,909 - +0.2
6,909 - +1.2
6,915 - +0.0
6,938 + +1.2
6,945 - +0.1
6,951 - +0.1
6,979 - -0.9
6,979 - +1.2
6,985 + +1.3
6,986 - +0.7
6,986 - +0.8
6,986 - +0.8
7,065 + -1.9
7,166 - EX28DRAFT_4042 0.56 +1.0
7,246 + -0.1
7,246 + +0.6
7,345 + EX28DRAFT_4043 0.11 +1.4
7,346 - EX28DRAFT_4043 0.11 +0.4
7,346 - EX28DRAFT_4043 0.11 +1.1
7,394 + EX28DRAFT_4043 0.18 +0.3
7,394 + EX28DRAFT_4043 0.18 +0.5
7,395 - EX28DRAFT_4043 0.18 +1.0
7,395 - EX28DRAFT_4043 0.18 +1.9
7,395 - EX28DRAFT_4043 0.18 +1.2
7,454 + EX28DRAFT_4043 0.26 +1.0
7,483 - EX28DRAFT_4043 0.30 +1.9
7,484 + EX28DRAFT_4043 0.30 +1.1
7,484 + EX28DRAFT_4043 0.30 +0.9
7,484 + EX28DRAFT_4043 0.30 -0.1
7,611 + EX28DRAFT_4043 0.47 +1.3
7,611 + EX28DRAFT_4043 0.47 +1.2
7,612 - EX28DRAFT_4043 0.47 +1.4
7,685 + EX28DRAFT_4043 0.56 +0.5
7,687 + EX28DRAFT_4043 0.57 +0.9
7,688 - EX28DRAFT_4043 0.57 +1.2
7,688 - EX28DRAFT_4043 0.57 +0.4
7,688 - EX28DRAFT_4043 0.57 -1.0
7,688 - EX28DRAFT_4043 0.57 +0.6

Or see this region's nucleotide sequence