Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3921 and EX28DRAFT_3922 are separated by 2 nucleotides EX28DRAFT_3922 and EX28DRAFT_3923 are separated by 117 nucleotides EX28DRAFT_3923 and EX28DRAFT_3924 are separated by 99 nucleotides
EX28DRAFT_3921: EX28DRAFT_3921 - P pilus assembly protein, pilin FimA, at 131,227 to 132,240
_3921
EX28DRAFT_3922: EX28DRAFT_3922 - Bacterial lipocalin, at 132,243 to 132,767
_3922
EX28DRAFT_3923: EX28DRAFT_3923 - Predicted transcriptional regulators, at 132,885 to 133,610
_3923
EX28DRAFT_3924: EX28DRAFT_3924 - hydroxyisourate hydrolase, at 133,710 to 134,120
_3924
Position (kb) 132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 131.304 kb on + strand at 131.305 kb on - strand at 131.329 kb on + strand, within EX28DRAFT_3921 at 131.510 kb on - strand, within EX28DRAFT_3921 at 131.545 kb on + strand, within EX28DRAFT_3921 at 131.545 kb on + strand, within EX28DRAFT_3921 at 131.546 kb on - strand, within EX28DRAFT_3921 at 131.581 kb on + strand, within EX28DRAFT_3921 at 131.581 kb on + strand, within EX28DRAFT_3921 at 131.582 kb on - strand, within EX28DRAFT_3921 at 131.583 kb on + strand, within EX28DRAFT_3921 at 131.584 kb on - strand, within EX28DRAFT_3921 at 131.639 kb on - strand, within EX28DRAFT_3921 at 131.679 kb on + strand, within EX28DRAFT_3921 at 131.710 kb on + strand, within EX28DRAFT_3921 at 131.712 kb on + strand, within EX28DRAFT_3921 at 131.712 kb on + strand, within EX28DRAFT_3921 at 131.713 kb on - strand, within EX28DRAFT_3921 at 131.713 kb on - strand, within EX28DRAFT_3921 at 131.713 kb on - strand, within EX28DRAFT_3921 at 131.751 kb on + strand, within EX28DRAFT_3921 at 131.752 kb on - strand, within EX28DRAFT_3921 at 131.820 kb on + strand, within EX28DRAFT_3921 at 132.169 kb on + strand at 132.169 kb on + strand at 132.170 kb on - strand at 132.398 kb on + strand, within EX28DRAFT_3922 at 132.399 kb on - strand, within EX28DRAFT_3922 at 132.421 kb on + strand, within EX28DRAFT_3922 at 132.422 kb on - strand, within EX28DRAFT_3922 at 132.422 kb on - strand, within EX28DRAFT_3922 at 132.430 kb on + strand, within EX28DRAFT_3922 at 132.487 kb on + strand, within EX28DRAFT_3922 at 132.487 kb on + strand, within EX28DRAFT_3922 at 132.488 kb on - strand, within EX28DRAFT_3922 at 132.488 kb on - strand, within EX28DRAFT_3922 at 132.578 kb on - strand, within EX28DRAFT_3922 at 132.710 kb on + strand, within EX28DRAFT_3922 at 132.799 kb on + strand at 132.805 kb on + strand at 132.806 kb on - strand at 132.850 kb on + strand at 132.851 kb on - strand at 132.851 kb on - strand at 132.852 kb on + strand at 132.852 kb on + strand at 132.853 kb on - strand at 132.853 kb on - strand at 132.891 kb on + strand at 133.326 kb on + strand, within EX28DRAFT_3923 at 133.327 kb on - strand, within EX28DRAFT_3923 at 133.373 kb on + strand, within EX28DRAFT_3923 at 133.374 kb on - strand, within EX28DRAFT_3923 at 133.374 kb on - strand, within EX28DRAFT_3923 at 133.511 kb on + strand, within EX28DRAFT_3923 at 133.511 kb on + strand, within EX28DRAFT_3923 at 133.512 kb on - strand, within EX28DRAFT_3923 at 133.690 kb on + strand at 133.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 131,304 + +0.1 131,305 - +1.0 131,329 + EX28DRAFT_3921 0.10 +0.2 131,510 - EX28DRAFT_3921 0.28 -0.1 131,545 + EX28DRAFT_3921 0.31 -0.0 131,545 + EX28DRAFT_3921 0.31 +0.0 131,546 - EX28DRAFT_3921 0.31 -3.3 131,581 + EX28DRAFT_3921 0.35 +0.1 131,581 + EX28DRAFT_3921 0.35 +0.2 131,582 - EX28DRAFT_3921 0.35 -0.9 131,583 + EX28DRAFT_3921 0.35 -0.1 131,584 - EX28DRAFT_3921 0.35 -0.3 131,639 - EX28DRAFT_3921 0.41 -1.3 131,679 + EX28DRAFT_3921 0.45 -0.2 131,710 + EX28DRAFT_3921 0.48 -1.4 131,712 + EX28DRAFT_3921 0.48 +0.5 131,712 + EX28DRAFT_3921 0.48 +0.2 131,713 - EX28DRAFT_3921 0.48 +0.2 131,713 - EX28DRAFT_3921 0.48 -1.0 131,713 - EX28DRAFT_3921 0.48 +0.1 131,751 + EX28DRAFT_3921 0.52 +0.4 131,752 - EX28DRAFT_3921 0.52 +0.1 131,820 + EX28DRAFT_3921 0.58 +0.3 132,169 + +0.4 132,169 + -0.7 132,170 - -0.4 132,398 + EX28DRAFT_3922 0.30 -0.1 132,399 - EX28DRAFT_3922 0.30 -0.3 132,421 + EX28DRAFT_3922 0.34 -1.9 132,422 - EX28DRAFT_3922 0.34 +0.4 132,422 - EX28DRAFT_3922 0.34 +0.5 132,430 + EX28DRAFT_3922 0.36 -0.2 132,487 + EX28DRAFT_3922 0.46 +1.1 132,487 + EX28DRAFT_3922 0.46 +0.5 132,488 - EX28DRAFT_3922 0.47 -0.5 132,488 - EX28DRAFT_3922 0.47 -0.7 132,578 - EX28DRAFT_3922 0.64 -0.5 132,710 + EX28DRAFT_3922 0.89 -1.3 132,799 + -0.1 132,805 + +0.2 132,806 - +0.9 132,850 + -0.4 132,851 - -0.3 132,851 - -0.1 132,852 + -3.0 132,852 + +1.0 132,853 - +0.5 132,853 - +0.2 132,891 + +0.5 133,326 + EX28DRAFT_3923 0.61 -0.3 133,327 - EX28DRAFT_3923 0.61 +0.4 133,373 + EX28DRAFT_3923 0.67 +0.3 133,374 - EX28DRAFT_3923 0.67 +0.6 133,374 - EX28DRAFT_3923 0.67 +0.7 133,511 + EX28DRAFT_3923 0.86 +0.5 133,511 + EX28DRAFT_3923 0.86 +0.3 133,512 - EX28DRAFT_3923 0.86 +0.4 133,690 + -0.2 133,691 - -0.8
Or see this region's nucleotide sequence