Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3844

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3843 and EX28DRAFT_3844 are separated by 85 nucleotidesEX28DRAFT_3844 and EX28DRAFT_3845 overlap by 4 nucleotides EX28DRAFT_3843: EX28DRAFT_3843 - NAD-dependent aldehyde dehydrogenases, at 50,273 to 51,811 _3843 EX28DRAFT_3844: EX28DRAFT_3844 - selenocysteine-specific elongation factor SelB, at 51,897 to 53,744 _3844 EX28DRAFT_3845: EX28DRAFT_3845 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 53,741 to 55,126 _3845 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.042 kb on + strand, within EX28DRAFT_3843at 51.050 kb on - strand, within EX28DRAFT_3843at 51.117 kb on + strand, within EX28DRAFT_3843at 51.368 kb on + strand, within EX28DRAFT_3843at 51.378 kb on - strand, within EX28DRAFT_3843at 51.547 kb on + strand, within EX28DRAFT_3843at 51.572 kb on - strand, within EX28DRAFT_3843at 51.583 kb on + strand, within EX28DRAFT_3843at 51.584 kb on - strand, within EX28DRAFT_3843at 51.687 kb on + strandat 51.688 kb on - strandat 51.690 kb on + strandat 51.728 kb on - strandat 51.835 kb on - strandat 51.845 kb on + strandat 51.845 kb on + strandat 51.846 kb on - strandat 51.887 kb on - strandat 51.933 kb on + strandat 51.980 kb on - strandat 52.167 kb on + strand, within EX28DRAFT_3844at 52.476 kb on + strand, within EX28DRAFT_3844at 52.477 kb on - strand, within EX28DRAFT_3844at 52.482 kb on - strand, within EX28DRAFT_3844at 52.563 kb on + strand, within EX28DRAFT_3844at 52.769 kb on + strand, within EX28DRAFT_3844at 52.769 kb on + strand, within EX28DRAFT_3844at 53.082 kb on + strand, within EX28DRAFT_3844at 53.082 kb on + strand, within EX28DRAFT_3844at 53.082 kb on + strand, within EX28DRAFT_3844at 53.083 kb on - strand, within EX28DRAFT_3844at 53.083 kb on - strand, within EX28DRAFT_3844at 53.129 kb on + strand, within EX28DRAFT_3844at 53.136 kb on + strand, within EX28DRAFT_3844at 53.136 kb on + strand, within EX28DRAFT_3844at 53.196 kb on - strand, within EX28DRAFT_3844at 53.262 kb on + strand, within EX28DRAFT_3844at 53.338 kb on + strand, within EX28DRAFT_3844at 53.339 kb on - strand, within EX28DRAFT_3844at 53.579 kb on + strandat 53.579 kb on + strandat 53.580 kb on - strandat 53.615 kb on - strandat 53.615 kb on - strandat 53.738 kb on + strandat 53.738 kb on + strandat 53.739 kb on - strandat 53.814 kb on + strandat 53.815 kb on - strandat 53.815 kb on - strandat 53.995 kb on - strand, within EX28DRAFT_3845at 54.020 kb on + strand, within EX28DRAFT_3845at 54.020 kb on + strand, within EX28DRAFT_3845at 54.021 kb on - strand, within EX28DRAFT_3845at 54.021 kb on - strand, within EX28DRAFT_3845at 54.021 kb on - strand, within EX28DRAFT_3845at 54.073 kb on + strand, within EX28DRAFT_3845at 54.073 kb on + strand, within EX28DRAFT_3845at 54.074 kb on - strand, within EX28DRAFT_3845at 54.310 kb on + strand, within EX28DRAFT_3845at 54.436 kb on + strand, within EX28DRAFT_3845at 54.441 kb on + strand, within EX28DRAFT_3845at 54.441 kb on + strand, within EX28DRAFT_3845at 54.441 kb on + strand, within EX28DRAFT_3845at 54.442 kb on - strand, within EX28DRAFT_3845at 54.442 kb on - strand, within EX28DRAFT_3845at 54.442 kb on - strand, within EX28DRAFT_3845at 54.442 kb on - strand, within EX28DRAFT_3845at 54.498 kb on + strand, within EX28DRAFT_3845at 54.545 kb on - strand, within EX28DRAFT_3845

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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51,042 + EX28DRAFT_3843 0.50 +0.4
51,050 - EX28DRAFT_3843 0.50 -0.4
51,117 + EX28DRAFT_3843 0.55 -1.5
51,368 + EX28DRAFT_3843 0.71 -0.5
51,378 - EX28DRAFT_3843 0.72 +0.3
51,547 + EX28DRAFT_3843 0.83 -0.1
51,572 - EX28DRAFT_3843 0.84 -1.4
51,583 + EX28DRAFT_3843 0.85 -0.5
51,584 - EX28DRAFT_3843 0.85 +0.1
51,687 + +0.5
51,688 - +0.2
51,690 + -0.0
51,728 - +0.0
51,835 - +0.9
51,845 + +0.5
51,845 + +2.2
51,846 - +0.4
51,887 - +0.9
51,933 + +0.3
51,980 - -0.1
52,167 + EX28DRAFT_3844 0.15 -1.3
52,476 + EX28DRAFT_3844 0.31 -0.8
52,477 - EX28DRAFT_3844 0.31 +0.2
52,482 - EX28DRAFT_3844 0.32 +0.4
52,563 + EX28DRAFT_3844 0.36 -1.8
52,769 + EX28DRAFT_3844 0.47 -0.1
52,769 + EX28DRAFT_3844 0.47 -0.1
53,082 + EX28DRAFT_3844 0.64 +0.9
53,082 + EX28DRAFT_3844 0.64 +0.2
53,082 + EX28DRAFT_3844 0.64 +0.1
53,083 - EX28DRAFT_3844 0.64 +0.9
53,083 - EX28DRAFT_3844 0.64 -0.5
53,129 + EX28DRAFT_3844 0.67 -0.2
53,136 + EX28DRAFT_3844 0.67 -0.0
53,136 + EX28DRAFT_3844 0.67 -1.0
53,196 - EX28DRAFT_3844 0.70 +0.2
53,262 + EX28DRAFT_3844 0.74 -0.3
53,338 + EX28DRAFT_3844 0.78 -0.2
53,339 - EX28DRAFT_3844 0.78 +0.2
53,579 + +0.2
53,579 + +0.0
53,580 - +0.3
53,615 - -0.2
53,615 - +0.5
53,738 + -0.6
53,738 + -0.3
53,739 - -0.3
53,814 + +0.0
53,815 - +0.2
53,815 - -0.3
53,995 - EX28DRAFT_3845 0.18 -0.2
54,020 + EX28DRAFT_3845 0.20 -0.4
54,020 + EX28DRAFT_3845 0.20 -0.7
54,021 - EX28DRAFT_3845 0.20 -0.0
54,021 - EX28DRAFT_3845 0.20 +0.7
54,021 - EX28DRAFT_3845 0.20 -0.7
54,073 + EX28DRAFT_3845 0.24 -1.0
54,073 + EX28DRAFT_3845 0.24 -0.7
54,074 - EX28DRAFT_3845 0.24 -0.4
54,310 + EX28DRAFT_3845 0.41 +0.1
54,436 + EX28DRAFT_3845 0.50 +0.1
54,441 + EX28DRAFT_3845 0.51 +0.8
54,441 + EX28DRAFT_3845 0.51 -0.4
54,441 + EX28DRAFT_3845 0.51 -0.2
54,442 - EX28DRAFT_3845 0.51 -0.0
54,442 - EX28DRAFT_3845 0.51 -0.6
54,442 - EX28DRAFT_3845 0.51 +0.3
54,442 - EX28DRAFT_3845 0.51 -0.0
54,498 + EX28DRAFT_3845 0.55 +0.0
54,545 - EX28DRAFT_3845 0.58 +0.0

Or see this region's nucleotide sequence