Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3786

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3784 and EX28DRAFT_3785 are separated by 106 nucleotidesEX28DRAFT_3785 and EX28DRAFT_3786 are separated by 40 nucleotidesEX28DRAFT_3786 and EX28DRAFT_3787 overlap by 8 nucleotides EX28DRAFT_3784: EX28DRAFT_3784 - hypothetical protein, at 466,037 to 466,441 _3784 EX28DRAFT_3785: EX28DRAFT_3785 - lipoprotein, YaeC family, at 466,548 to 467,363 _3785 EX28DRAFT_3786: EX28DRAFT_3786 - ABC-type metal ion transport system, permease component, at 467,404 to 468,057 _3786 EX28DRAFT_3787: EX28DRAFT_3787 - D-methionine ABC transporter, ATP-binding protein, at 468,050 to 469,081 _3787 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 466.441 kb on + strandat 466.444 kb on + strandat 466.444 kb on + strandat 466.445 kb on - strandat 466.445 kb on - strandat 466.445 kb on - strandat 466.476 kb on - strandat 466.514 kb on - strandat 466.530 kb on + strandat 466.533 kb on + strandat 466.533 kb on + strandat 466.533 kb on + strandat 466.534 kb on - strandat 466.534 kb on - strandat 466.534 kb on - strandat 466.559 kb on + strandat 466.615 kb on + strandat 466.616 kb on - strandat 466.697 kb on + strand, within EX28DRAFT_3785at 466.750 kb on + strand, within EX28DRAFT_3785at 466.751 kb on - strand, within EX28DRAFT_3785at 466.751 kb on - strand, within EX28DRAFT_3785at 467.061 kb on - strand, within EX28DRAFT_3785at 467.092 kb on + strand, within EX28DRAFT_3785at 467.092 kb on + strand, within EX28DRAFT_3785at 467.100 kb on - strand, within EX28DRAFT_3785at 467.158 kb on + strand, within EX28DRAFT_3785at 467.158 kb on + strand, within EX28DRAFT_3785at 467.194 kb on + strand, within EX28DRAFT_3785at 467.194 kb on + strand, within EX28DRAFT_3785at 467.195 kb on - strand, within EX28DRAFT_3785at 467.264 kb on + strand, within EX28DRAFT_3785at 467.331 kb on + strandat 467.332 kb on - strandat 467.350 kb on - strandat 467.355 kb on - strandat 467.374 kb on + strandat 467.399 kb on + strandat 467.405 kb on + strandat 467.456 kb on + strandat 467.456 kb on + strandat 467.505 kb on + strand, within EX28DRAFT_3786at 467.505 kb on + strand, within EX28DRAFT_3786at 467.506 kb on - strand, within EX28DRAFT_3786at 467.506 kb on - strand, within EX28DRAFT_3786at 467.507 kb on + strand, within EX28DRAFT_3786at 467.515 kb on - strand, within EX28DRAFT_3786at 467.517 kb on - strand, within EX28DRAFT_3786at 467.764 kb on + strand, within EX28DRAFT_3786at 467.765 kb on - strand, within EX28DRAFT_3786at 467.863 kb on - strand, within EX28DRAFT_3786at 467.863 kb on - strand, within EX28DRAFT_3786at 467.943 kb on - strand, within EX28DRAFT_3786at 467.943 kb on - strand, within EX28DRAFT_3786at 467.943 kb on - strand, within EX28DRAFT_3786at 467.951 kb on - strand, within EX28DRAFT_3786at 468.057 kb on + strandat 468.058 kb on - strandat 468.077 kb on + strandat 468.078 kb on - strandat 468.078 kb on - strandat 468.175 kb on - strand, within EX28DRAFT_3787at 468.407 kb on + strand, within EX28DRAFT_3787at 468.408 kb on - strand, within EX28DRAFT_3787at 468.490 kb on + strand, within EX28DRAFT_3787at 468.490 kb on + strand, within EX28DRAFT_3787at 468.491 kb on - strand, within EX28DRAFT_3787at 468.491 kb on - strand, within EX28DRAFT_3787at 468.491 kb on - strand, within EX28DRAFT_3787at 468.491 kb on - strand, within EX28DRAFT_3787at 468.493 kb on + strand, within EX28DRAFT_3787at 468.493 kb on + strand, within EX28DRAFT_3787at 468.494 kb on - strand, within EX28DRAFT_3787at 468.599 kb on + strand, within EX28DRAFT_3787at 468.676 kb on + strand, within EX28DRAFT_3787at 468.896 kb on + strand, within EX28DRAFT_3787at 468.952 kb on + strand, within EX28DRAFT_3787at 468.953 kb on - strand, within EX28DRAFT_3787

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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466,441 + -0.2
466,444 + -0.5
466,444 + +0.8
466,445 - +0.2
466,445 - +0.0
466,445 - -0.1
466,476 - +0.3
466,514 - -1.0
466,530 + +0.7
466,533 + +0.1
466,533 + -0.3
466,533 + +1.3
466,534 - +0.8
466,534 - +4.1
466,534 - +0.2
466,559 + -0.1
466,615 + -0.3
466,616 - -0.6
466,697 + EX28DRAFT_3785 0.18 +0.1
466,750 + EX28DRAFT_3785 0.25 +0.6
466,751 - EX28DRAFT_3785 0.25 +0.8
466,751 - EX28DRAFT_3785 0.25 +0.3
467,061 - EX28DRAFT_3785 0.63 +0.6
467,092 + EX28DRAFT_3785 0.67 +0.0
467,092 + EX28DRAFT_3785 0.67 +0.2
467,100 - EX28DRAFT_3785 0.68 +0.2
467,158 + EX28DRAFT_3785 0.75 +0.2
467,158 + EX28DRAFT_3785 0.75 -0.8
467,194 + EX28DRAFT_3785 0.79 +0.0
467,194 + EX28DRAFT_3785 0.79 +1.7
467,195 - EX28DRAFT_3785 0.79 -0.4
467,264 + EX28DRAFT_3785 0.88 -0.5
467,331 + +0.3
467,332 - -0.6
467,350 - +0.5
467,355 - +0.3
467,374 + +0.2
467,399 + +0.1
467,405 + -0.0
467,456 + -2.5
467,456 + +2.8
467,505 + EX28DRAFT_3786 0.15 -0.3
467,505 + EX28DRAFT_3786 0.15 +0.1
467,506 - EX28DRAFT_3786 0.16 +0.5
467,506 - EX28DRAFT_3786 0.16 -0.2
467,507 + EX28DRAFT_3786 0.16 -0.7
467,515 - EX28DRAFT_3786 0.17 -0.2
467,517 - EX28DRAFT_3786 0.17 +0.3
467,764 + EX28DRAFT_3786 0.55 +0.1
467,765 - EX28DRAFT_3786 0.55 -0.4
467,863 - EX28DRAFT_3786 0.70 -0.6
467,863 - EX28DRAFT_3786 0.70 -1.2
467,943 - EX28DRAFT_3786 0.82 -0.1
467,943 - EX28DRAFT_3786 0.82 +0.3
467,943 - EX28DRAFT_3786 0.82 -0.4
467,951 - EX28DRAFT_3786 0.84 +0.6
468,057 + -0.2
468,058 - -1.6
468,077 + -0.1
468,078 - +0.1
468,078 - +0.1
468,175 - EX28DRAFT_3787 0.12 -0.9
468,407 + EX28DRAFT_3787 0.35 +2.1
468,408 - EX28DRAFT_3787 0.35 +0.2
468,490 + EX28DRAFT_3787 0.43 -0.4
468,490 + EX28DRAFT_3787 0.43 -0.4
468,491 - EX28DRAFT_3787 0.43 -0.3
468,491 - EX28DRAFT_3787 0.43 -0.7
468,491 - EX28DRAFT_3787 0.43 -1.6
468,491 - EX28DRAFT_3787 0.43 +0.7
468,493 + EX28DRAFT_3787 0.43 -0.0
468,493 + EX28DRAFT_3787 0.43 -0.5
468,494 - EX28DRAFT_3787 0.43 +0.3
468,599 + EX28DRAFT_3787 0.53 -0.0
468,676 + EX28DRAFT_3787 0.61 +0.6
468,896 + EX28DRAFT_3787 0.82 -0.3
468,952 + EX28DRAFT_3787 0.87 +0.3
468,953 - EX28DRAFT_3787 0.88 -0.5

Or see this region's nucleotide sequence