Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3784

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3782 and EX28DRAFT_3783 are separated by 113 nucleotidesEX28DRAFT_3783 and EX28DRAFT_3784 overlap by 4 nucleotidesEX28DRAFT_3784 and EX28DRAFT_3785 are separated by 106 nucleotidesEX28DRAFT_3785 and EX28DRAFT_3786 are separated by 40 nucleotides EX28DRAFT_3782: EX28DRAFT_3782 - prolyl-tRNA synthetase (EC 6.1.1.15), at 463,501 to 465,219 _3782 EX28DRAFT_3783: EX28DRAFT_3783 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA, at 465,333 to 466,040 _3783 EX28DRAFT_3784: EX28DRAFT_3784 - hypothetical protein, at 466,037 to 466,441 _3784 EX28DRAFT_3785: EX28DRAFT_3785 - lipoprotein, YaeC family, at 466,548 to 467,363 _3785 EX28DRAFT_3786: EX28DRAFT_3786 - ABC-type metal ion transport system, permease component, at 467,404 to 468,057 _3786 Position (kb) 466 467Strain fitness (log2 ratio) -1 0 1 2 3 4at 465.446 kb on - strand, within EX28DRAFT_3783at 465.446 kb on - strand, within EX28DRAFT_3783at 465.493 kb on - strand, within EX28DRAFT_3783at 465.674 kb on + strand, within EX28DRAFT_3783at 465.678 kb on + strand, within EX28DRAFT_3783at 465.679 kb on - strand, within EX28DRAFT_3783at 465.712 kb on - strand, within EX28DRAFT_3783at 465.821 kb on + strand, within EX28DRAFT_3783at 465.870 kb on + strand, within EX28DRAFT_3783at 465.870 kb on + strand, within EX28DRAFT_3783at 465.871 kb on - strand, within EX28DRAFT_3783at 465.888 kb on + strand, within EX28DRAFT_3783at 465.917 kb on - strand, within EX28DRAFT_3783at 465.995 kb on - strandat 466.385 kb on + strand, within EX28DRAFT_3784at 466.390 kb on + strand, within EX28DRAFT_3784at 466.390 kb on + strand, within EX28DRAFT_3784at 466.391 kb on - strand, within EX28DRAFT_3784at 466.391 kb on - strand, within EX28DRAFT_3784at 466.391 kb on - strand, within EX28DRAFT_3784at 466.441 kb on + strandat 466.444 kb on + strandat 466.444 kb on + strandat 466.445 kb on - strandat 466.445 kb on - strandat 466.445 kb on - strandat 466.476 kb on - strandat 466.514 kb on - strandat 466.530 kb on + strandat 466.533 kb on + strandat 466.533 kb on + strandat 466.533 kb on + strandat 466.534 kb on - strandat 466.534 kb on - strandat 466.534 kb on - strandat 466.559 kb on + strandat 466.615 kb on + strandat 466.616 kb on - strandat 466.697 kb on + strand, within EX28DRAFT_3785at 466.750 kb on + strand, within EX28DRAFT_3785at 466.751 kb on - strand, within EX28DRAFT_3785at 466.751 kb on - strand, within EX28DRAFT_3785at 467.061 kb on - strand, within EX28DRAFT_3785at 467.092 kb on + strand, within EX28DRAFT_3785at 467.092 kb on + strand, within EX28DRAFT_3785at 467.100 kb on - strand, within EX28DRAFT_3785at 467.158 kb on + strand, within EX28DRAFT_3785at 467.158 kb on + strand, within EX28DRAFT_3785at 467.194 kb on + strand, within EX28DRAFT_3785at 467.194 kb on + strand, within EX28DRAFT_3785at 467.195 kb on - strand, within EX28DRAFT_3785at 467.264 kb on + strand, within EX28DRAFT_3785at 467.331 kb on + strandat 467.332 kb on - strandat 467.350 kb on - strandat 467.355 kb on - strandat 467.374 kb on + strandat 467.399 kb on + strandat 467.405 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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465,446 - EX28DRAFT_3783 0.16 -0.4
465,446 - EX28DRAFT_3783 0.16 -0.8
465,493 - EX28DRAFT_3783 0.23 +0.7
465,674 + EX28DRAFT_3783 0.48 +0.1
465,678 + EX28DRAFT_3783 0.49 -0.5
465,679 - EX28DRAFT_3783 0.49 -0.1
465,712 - EX28DRAFT_3783 0.54 +0.1
465,821 + EX28DRAFT_3783 0.69 +0.2
465,870 + EX28DRAFT_3783 0.76 +0.3
465,870 + EX28DRAFT_3783 0.76 +0.4
465,871 - EX28DRAFT_3783 0.76 -1.2
465,888 + EX28DRAFT_3783 0.78 +1.3
465,917 - EX28DRAFT_3783 0.82 +0.1
465,995 - +1.1
466,385 + EX28DRAFT_3784 0.86 +0.7
466,390 + EX28DRAFT_3784 0.87 +0.2
466,390 + EX28DRAFT_3784 0.87 +0.5
466,391 - EX28DRAFT_3784 0.87 +0.4
466,391 - EX28DRAFT_3784 0.87 +0.7
466,391 - EX28DRAFT_3784 0.87 +0.0
466,441 + -0.2
466,444 + -0.5
466,444 + +0.8
466,445 - +0.2
466,445 - +0.0
466,445 - -0.1
466,476 - +0.3
466,514 - -1.0
466,530 + +0.7
466,533 + +0.1
466,533 + -0.3
466,533 + +1.3
466,534 - +0.8
466,534 - +4.1
466,534 - +0.2
466,559 + -0.1
466,615 + -0.3
466,616 - -0.6
466,697 + EX28DRAFT_3785 0.18 +0.1
466,750 + EX28DRAFT_3785 0.25 +0.6
466,751 - EX28DRAFT_3785 0.25 +0.8
466,751 - EX28DRAFT_3785 0.25 +0.3
467,061 - EX28DRAFT_3785 0.63 +0.6
467,092 + EX28DRAFT_3785 0.67 +0.0
467,092 + EX28DRAFT_3785 0.67 +0.2
467,100 - EX28DRAFT_3785 0.68 +0.2
467,158 + EX28DRAFT_3785 0.75 +0.2
467,158 + EX28DRAFT_3785 0.75 -0.8
467,194 + EX28DRAFT_3785 0.79 +0.0
467,194 + EX28DRAFT_3785 0.79 +1.7
467,195 - EX28DRAFT_3785 0.79 -0.4
467,264 + EX28DRAFT_3785 0.88 -0.5
467,331 + +0.3
467,332 - -0.6
467,350 - +0.5
467,355 - +0.3
467,374 + +0.2
467,399 + +0.1
467,405 + -0.0

Or see this region's nucleotide sequence