Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3718

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3716 and EX28DRAFT_3717 are separated by 31 nucleotidesEX28DRAFT_3717 and EX28DRAFT_3718 are separated by 0 nucleotidesEX28DRAFT_3718 and EX28DRAFT_3719 are separated by 114 nucleotidesEX28DRAFT_3719 and EX28DRAFT_3720 are separated by 67 nucleotides EX28DRAFT_3716: EX28DRAFT_3716 - Uncharacterized protein conserved in bacteria, at 392,023 to 392,385 _3716 EX28DRAFT_3717: EX28DRAFT_3717 - S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form, at 392,417 to 393,211 _3717 EX28DRAFT_3718: EX28DRAFT_3718 - spermidine synthase, at 393,212 to 394,081 _3718 EX28DRAFT_3719: EX28DRAFT_3719 - Bacterial chaperone lipoprotein (PulS_OutS), at 394,196 to 394,582 _3719 EX28DRAFT_3720: EX28DRAFT_3720 - Putative multicopper oxidases, at 394,650 to 396,257 _3720 Position (kb) 393 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 392.212 kb on - strand, within EX28DRAFT_3716at 392.212 kb on - strand, within EX28DRAFT_3716at 392.212 kb on - strand, within EX28DRAFT_3716at 392.212 kb on - strand, within EX28DRAFT_3716at 392.300 kb on - strand, within EX28DRAFT_3716at 392.351 kb on + strandat 392.480 kb on - strandat 392.530 kb on + strand, within EX28DRAFT_3717at 392.530 kb on + strand, within EX28DRAFT_3717at 392.530 kb on + strand, within EX28DRAFT_3717at 392.531 kb on - strand, within EX28DRAFT_3717at 392.531 kb on - strand, within EX28DRAFT_3717at 392.532 kb on + strand, within EX28DRAFT_3717at 392.533 kb on - strand, within EX28DRAFT_3717at 392.540 kb on - strand, within EX28DRAFT_3717at 392.554 kb on + strand, within EX28DRAFT_3717at 392.559 kb on - strand, within EX28DRAFT_3717at 392.578 kb on + strand, within EX28DRAFT_3717at 392.590 kb on - strand, within EX28DRAFT_3717at 392.614 kb on - strand, within EX28DRAFT_3717at 392.639 kb on - strand, within EX28DRAFT_3717at 392.639 kb on - strand, within EX28DRAFT_3717at 392.639 kb on - strand, within EX28DRAFT_3717at 392.657 kb on - strand, within EX28DRAFT_3717at 392.760 kb on + strand, within EX28DRAFT_3717at 392.760 kb on + strand, within EX28DRAFT_3717at 392.761 kb on - strand, within EX28DRAFT_3717at 392.761 kb on - strand, within EX28DRAFT_3717at 392.824 kb on + strand, within EX28DRAFT_3717at 392.872 kb on + strand, within EX28DRAFT_3717at 392.872 kb on + strand, within EX28DRAFT_3717at 392.873 kb on - strand, within EX28DRAFT_3717at 392.882 kb on - strand, within EX28DRAFT_3717at 392.938 kb on + strand, within EX28DRAFT_3717at 393.000 kb on + strand, within EX28DRAFT_3717at 393.000 kb on + strand, within EX28DRAFT_3717at 393.000 kb on + strand, within EX28DRAFT_3717at 393.037 kb on + strand, within EX28DRAFT_3717at 393.084 kb on + strand, within EX28DRAFT_3717at 393.084 kb on + strand, within EX28DRAFT_3717at 393.098 kb on - strand, within EX28DRAFT_3717at 393.099 kb on + strand, within EX28DRAFT_3717at 393.099 kb on + strand, within EX28DRAFT_3717at 393.100 kb on - strand, within EX28DRAFT_3717at 393.138 kb on + strandat 393.139 kb on - strandat 393.139 kb on - strandat 393.150 kb on + strandat 393.151 kb on - strandat 393.151 kb on - strandat 393.151 kb on - strandat 393.151 kb on - strandat 393.151 kb on - strandat 393.199 kb on + strandat 393.226 kb on + strandat 393.249 kb on + strandat 393.274 kb on + strandat 393.292 kb on - strandat 393.347 kb on + strand, within EX28DRAFT_3718at 393.347 kb on + strand, within EX28DRAFT_3718at 393.348 kb on - strand, within EX28DRAFT_3718at 393.402 kb on + strand, within EX28DRAFT_3718at 393.402 kb on + strand, within EX28DRAFT_3718at 393.403 kb on - strand, within EX28DRAFT_3718at 393.447 kb on + strand, within EX28DRAFT_3718at 393.448 kb on - strand, within EX28DRAFT_3718at 393.559 kb on - strand, within EX28DRAFT_3718at 393.571 kb on + strand, within EX28DRAFT_3718at 393.619 kb on + strand, within EX28DRAFT_3718at 393.619 kb on + strand, within EX28DRAFT_3718at 393.696 kb on + strand, within EX28DRAFT_3718at 393.696 kb on + strand, within EX28DRAFT_3718at 393.697 kb on - strand, within EX28DRAFT_3718at 393.724 kb on - strand, within EX28DRAFT_3718at 393.767 kb on - strand, within EX28DRAFT_3718at 393.767 kb on - strand, within EX28DRAFT_3718at 393.895 kb on - strand, within EX28DRAFT_3718at 393.898 kb on + strand, within EX28DRAFT_3718at 393.899 kb on - strand, within EX28DRAFT_3718at 393.899 kb on - strand, within EX28DRAFT_3718at 393.899 kb on - strand, within EX28DRAFT_3718at 394.006 kb on - strandat 394.006 kb on - strandat 394.029 kb on + strandat 394.029 kb on + strandat 394.099 kb on + strandat 394.099 kb on + strandat 394.100 kb on - strandat 394.111 kb on - strandat 394.139 kb on + strandat 394.144 kb on - strandat 394.144 kb on - strandat 394.144 kb on - strandat 394.198 kb on - strandat 394.453 kb on + strand, within EX28DRAFT_3719at 394.482 kb on + strand, within EX28DRAFT_3719at 394.483 kb on - strand, within EX28DRAFT_3719at 394.551 kb on - strandat 394.582 kb on + strandat 394.582 kb on + strandat 394.583 kb on - strandat 394.583 kb on - strandat 394.583 kb on - strandat 394.583 kb on - strandat 394.745 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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392,212 - EX28DRAFT_3716 0.52 -0.3
392,212 - EX28DRAFT_3716 0.52 -0.8
392,212 - EX28DRAFT_3716 0.52 -1.0
392,212 - EX28DRAFT_3716 0.52 +0.1
392,300 - EX28DRAFT_3716 0.76 -0.9
392,351 + -0.1
392,480 - -0.3
392,530 + EX28DRAFT_3717 0.14 -0.5
392,530 + EX28DRAFT_3717 0.14 -0.7
392,530 + EX28DRAFT_3717 0.14 -1.1
392,531 - EX28DRAFT_3717 0.14 +0.1
392,531 - EX28DRAFT_3717 0.14 -0.1
392,532 + EX28DRAFT_3717 0.14 -1.2
392,533 - EX28DRAFT_3717 0.15 +0.3
392,540 - EX28DRAFT_3717 0.15 +0.2
392,554 + EX28DRAFT_3717 0.17 +1.3
392,559 - EX28DRAFT_3717 0.18 -2.2
392,578 + EX28DRAFT_3717 0.20 -0.4
392,590 - EX28DRAFT_3717 0.22 -0.2
392,614 - EX28DRAFT_3717 0.25 +0.0
392,639 - EX28DRAFT_3717 0.28 -0.3
392,639 - EX28DRAFT_3717 0.28 +1.0
392,639 - EX28DRAFT_3717 0.28 -0.2
392,657 - EX28DRAFT_3717 0.30 -0.5
392,760 + EX28DRAFT_3717 0.43 -0.3
392,760 + EX28DRAFT_3717 0.43 +0.0
392,761 - EX28DRAFT_3717 0.43 -0.3
392,761 - EX28DRAFT_3717 0.43 -0.1
392,824 + EX28DRAFT_3717 0.51 -0.5
392,872 + EX28DRAFT_3717 0.57 -0.8
392,872 + EX28DRAFT_3717 0.57 -0.3
392,873 - EX28DRAFT_3717 0.57 +0.5
392,882 - EX28DRAFT_3717 0.58 -0.5
392,938 + EX28DRAFT_3717 0.66 -0.4
393,000 + EX28DRAFT_3717 0.73 -0.3
393,000 + EX28DRAFT_3717 0.73 -0.5
393,000 + EX28DRAFT_3717 0.73 -0.7
393,037 + EX28DRAFT_3717 0.78 -1.8
393,084 + EX28DRAFT_3717 0.84 +0.0
393,084 + EX28DRAFT_3717 0.84 -0.4
393,098 - EX28DRAFT_3717 0.86 -0.2
393,099 + EX28DRAFT_3717 0.86 -0.2
393,099 + EX28DRAFT_3717 0.86 +0.1
393,100 - EX28DRAFT_3717 0.86 +0.9
393,138 + +0.2
393,139 - -0.1
393,139 - +0.3
393,150 + -1.5
393,151 - -1.1
393,151 - +0.2
393,151 - +0.5
393,151 - +1.8
393,151 - +0.2
393,199 + -0.4
393,226 + -0.4
393,249 + +0.8
393,274 + -0.6
393,292 - -0.8
393,347 + EX28DRAFT_3718 0.16 -3.0
393,347 + EX28DRAFT_3718 0.16 -0.1
393,348 - EX28DRAFT_3718 0.16 -0.0
393,402 + EX28DRAFT_3718 0.22 -0.2
393,402 + EX28DRAFT_3718 0.22 +0.7
393,403 - EX28DRAFT_3718 0.22 +0.4
393,447 + EX28DRAFT_3718 0.27 -1.3
393,448 - EX28DRAFT_3718 0.27 +1.0
393,559 - EX28DRAFT_3718 0.40 +0.4
393,571 + EX28DRAFT_3718 0.41 -0.1
393,619 + EX28DRAFT_3718 0.47 -2.6
393,619 + EX28DRAFT_3718 0.47 -1.7
393,696 + EX28DRAFT_3718 0.56 +0.4
393,696 + EX28DRAFT_3718 0.56 -0.4
393,697 - EX28DRAFT_3718 0.56 -0.4
393,724 - EX28DRAFT_3718 0.59 -0.6
393,767 - EX28DRAFT_3718 0.64 -1.7
393,767 - EX28DRAFT_3718 0.64 -0.5
393,895 - EX28DRAFT_3718 0.79 +0.0
393,898 + EX28DRAFT_3718 0.79 +0.1
393,899 - EX28DRAFT_3718 0.79 +0.4
393,899 - EX28DRAFT_3718 0.79 -0.4
393,899 - EX28DRAFT_3718 0.79 -0.6
394,006 - -0.0
394,006 - -0.2
394,029 + +0.3
394,029 + -0.6
394,099 + -0.4
394,099 + -0.5
394,100 - +0.0
394,111 - +0.4
394,139 + -0.1
394,144 - +0.3
394,144 - +0.2
394,144 - +0.2
394,198 - +0.7
394,453 + EX28DRAFT_3719 0.66 +0.3
394,482 + EX28DRAFT_3719 0.74 -0.1
394,483 - EX28DRAFT_3719 0.74 +0.4
394,551 - +0.8
394,582 + +0.4
394,582 + -0.2
394,583 - -1.5
394,583 - +0.1
394,583 - +0.3
394,583 - +0.0
394,745 - +1.0

Or see this region's nucleotide sequence