Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3483 and EX28DRAFT_3484 are separated by 121 nucleotides EX28DRAFT_3484 and EX28DRAFT_3485 overlap by 1 nucleotides EX28DRAFT_3485 and EX28DRAFT_3486 are separated by 146 nucleotides EX28DRAFT_3486 and EX28DRAFT_3487 are separated by 54 nucleotides EX28DRAFT_3487 and EX28DRAFT_3488 are separated by 90 nucleotides
EX28DRAFT_3483: EX28DRAFT_3483 - Phage major capsid protein E, at 146,919 to 147,950
_3483
EX28DRAFT_3484: EX28DRAFT_3484 - hypothetical protein, at 148,072 to 148,263
_3484
EX28DRAFT_3485: EX28DRAFT_3485 - hypothetical protein, at 148,263 to 150,107
_3485
EX28DRAFT_3486: EX28DRAFT_3486 - hypothetical protein, at 150,254 to 150,382
_3486
EX28DRAFT_3487: EX28DRAFT_3487 - hypothetical protein, at 150,437 to 150,904
_3487
EX28DRAFT_3488: EX28DRAFT_3488 - Integrase, at 150,995 to 152,245
_3488
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2 at 147.294 kb on - strand, within EX28DRAFT_3483 at 147.322 kb on + strand, within EX28DRAFT_3483 at 147.391 kb on + strand, within EX28DRAFT_3483 at 147.392 kb on - strand, within EX28DRAFT_3483 at 147.414 kb on - strand, within EX28DRAFT_3483 at 147.414 kb on - strand, within EX28DRAFT_3483 at 147.426 kb on - strand, within EX28DRAFT_3483 at 147.442 kb on + strand, within EX28DRAFT_3483 at 147.442 kb on + strand, within EX28DRAFT_3483 at 147.443 kb on - strand, within EX28DRAFT_3483 at 147.443 kb on - strand, within EX28DRAFT_3483 at 147.616 kb on + strand, within EX28DRAFT_3483 at 147.616 kb on + strand, within EX28DRAFT_3483 at 147.617 kb on - strand, within EX28DRAFT_3483 at 147.618 kb on + strand, within EX28DRAFT_3483 at 147.644 kb on + strand, within EX28DRAFT_3483 at 147.644 kb on + strand, within EX28DRAFT_3483 at 147.706 kb on + strand, within EX28DRAFT_3483 at 147.740 kb on + strand, within EX28DRAFT_3483 at 147.783 kb on + strand, within EX28DRAFT_3483 at 147.783 kb on + strand, within EX28DRAFT_3483 at 147.783 kb on + strand, within EX28DRAFT_3483 at 147.784 kb on - strand, within EX28DRAFT_3483 at 147.784 kb on - strand, within EX28DRAFT_3483 at 147.784 kb on - strand, within EX28DRAFT_3483 at 147.837 kb on + strand, within EX28DRAFT_3483 at 147.837 kb on + strand, within EX28DRAFT_3483 at 147.837 kb on + strand, within EX28DRAFT_3483 at 147.838 kb on - strand, within EX28DRAFT_3483 at 147.839 kb on + strand, within EX28DRAFT_3483 at 147.932 kb on - strand at 147.935 kb on + strand at 147.935 kb on + strand at 147.936 kb on - strand at 147.936 kb on - strand at 148.071 kb on - strand at 148.137 kb on - strand, within EX28DRAFT_3484 at 148.197 kb on - strand, within EX28DRAFT_3484 at 148.217 kb on + strand, within EX28DRAFT_3484 at 148.218 kb on - strand, within EX28DRAFT_3484 at 148.245 kb on + strand at 148.245 kb on + strand at 148.418 kb on + strand at 148.419 kb on - strand at 148.424 kb on + strand at 148.647 kb on - strand, within EX28DRAFT_3485 at 148.657 kb on - strand, within EX28DRAFT_3485 at 148.657 kb on - strand, within EX28DRAFT_3485 at 148.707 kb on - strand, within EX28DRAFT_3485 at 148.736 kb on + strand, within EX28DRAFT_3485 at 148.756 kb on + strand, within EX28DRAFT_3485 at 148.805 kb on + strand, within EX28DRAFT_3485 at 148.806 kb on - strand, within EX28DRAFT_3485 at 148.806 kb on - strand, within EX28DRAFT_3485 at 148.806 kb on - strand, within EX28DRAFT_3485 at 148.813 kb on - strand, within EX28DRAFT_3485 at 148.844 kb on + strand, within EX28DRAFT_3485 at 148.876 kb on + strand, within EX28DRAFT_3485 at 148.876 kb on + strand, within EX28DRAFT_3485 at 148.877 kb on - strand, within EX28DRAFT_3485 at 148.891 kb on + strand, within EX28DRAFT_3485 at 148.891 kb on + strand, within EX28DRAFT_3485 at 148.894 kb on + strand, within EX28DRAFT_3485 at 148.928 kb on + strand, within EX28DRAFT_3485 at 148.980 kb on - strand, within EX28DRAFT_3485 at 149.093 kb on - strand, within EX28DRAFT_3485 at 149.096 kb on + strand, within EX28DRAFT_3485 at 149.099 kb on + strand, within EX28DRAFT_3485 at 149.101 kb on - strand, within EX28DRAFT_3485 at 149.119 kb on + strand, within EX28DRAFT_3485 at 149.168 kb on + strand, within EX28DRAFT_3485 at 149.169 kb on - strand, within EX28DRAFT_3485 at 149.171 kb on + strand, within EX28DRAFT_3485 at 149.192 kb on + strand, within EX28DRAFT_3485 at 149.235 kb on - strand, within EX28DRAFT_3485 at 149.328 kb on + strand, within EX28DRAFT_3485 at 149.328 kb on + strand, within EX28DRAFT_3485 at 149.363 kb on + strand, within EX28DRAFT_3485 at 149.364 kb on - strand, within EX28DRAFT_3485 at 149.419 kb on + strand, within EX28DRAFT_3485 at 149.420 kb on - strand, within EX28DRAFT_3485 at 149.437 kb on - strand, within EX28DRAFT_3485 at 149.453 kb on - strand, within EX28DRAFT_3485 at 149.462 kb on + strand, within EX28DRAFT_3485 at 149.522 kb on + strand, within EX28DRAFT_3485 at 149.576 kb on - strand, within EX28DRAFT_3485 at 149.576 kb on - strand, within EX28DRAFT_3485 at 149.591 kb on - strand, within EX28DRAFT_3485 at 149.725 kb on - strand, within EX28DRAFT_3485 at 149.738 kb on + strand, within EX28DRAFT_3485 at 149.868 kb on + strand, within EX28DRAFT_3485 at 149.869 kb on - strand, within EX28DRAFT_3485 at 149.869 kb on - strand, within EX28DRAFT_3485 at 149.869 kb on - strand, within EX28DRAFT_3485 at 149.869 kb on - strand, within EX28DRAFT_3485 at 149.932 kb on - strand at 149.933 kb on + strand at 149.933 kb on + strand at 149.934 kb on - strand at 149.980 kb on + strand at 149.980 kb on + strand at 149.981 kb on - strand at 149.984 kb on + strand at 149.985 kb on - strand at 150.016 kb on - strand at 150.032 kb on + strand at 150.033 kb on - strand at 150.115 kb on + strand at 150.153 kb on - strand at 150.162 kb on + strand at 150.162 kb on + strand at 150.197 kb on + strand at 150.202 kb on - strand at 150.216 kb on + strand at 150.226 kb on + strand at 150.260 kb on - strand at 150.472 kb on + strand at 150.472 kb on + strand at 150.473 kb on - strand at 150.473 kb on - strand at 150.473 kb on - strand at 150.473 kb on - strand at 150.478 kb on - strand at 150.512 kb on - strand, within EX28DRAFT_3487 at 150.649 kb on - strand, within EX28DRAFT_3487 at 150.769 kb on - strand, within EX28DRAFT_3487 at 150.770 kb on + strand, within EX28DRAFT_3487 at 150.956 kb on + strand at 150.997 kb on - strand at 151.023 kb on - strand at 151.035 kb on + strand at 151.074 kb on + strand at 151.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 147,294 - EX28DRAFT_3483 0.36 +0.4 147,322 + EX28DRAFT_3483 0.39 -1.0 147,391 + EX28DRAFT_3483 0.46 +0.5 147,392 - EX28DRAFT_3483 0.46 +0.2 147,414 - EX28DRAFT_3483 0.48 +0.4 147,414 - EX28DRAFT_3483 0.48 +0.1 147,426 - EX28DRAFT_3483 0.49 +0.2 147,442 + EX28DRAFT_3483 0.51 -0.4 147,442 + EX28DRAFT_3483 0.51 +0.3 147,443 - EX28DRAFT_3483 0.51 -1.7 147,443 - EX28DRAFT_3483 0.51 -0.5 147,616 + EX28DRAFT_3483 0.68 -0.1 147,616 + EX28DRAFT_3483 0.68 -0.7 147,617 - EX28DRAFT_3483 0.68 +0.5 147,618 + EX28DRAFT_3483 0.68 -0.4 147,644 + EX28DRAFT_3483 0.70 +0.1 147,644 + EX28DRAFT_3483 0.70 -0.1 147,706 + EX28DRAFT_3483 0.76 +0.2 147,740 + EX28DRAFT_3483 0.80 -0.2 147,783 + EX28DRAFT_3483 0.84 +0.2 147,783 + EX28DRAFT_3483 0.84 -0.8 147,783 + EX28DRAFT_3483 0.84 +0.5 147,784 - EX28DRAFT_3483 0.84 +0.3 147,784 - EX28DRAFT_3483 0.84 -0.3 147,784 - EX28DRAFT_3483 0.84 -0.4 147,837 + EX28DRAFT_3483 0.89 +1.3 147,837 + EX28DRAFT_3483 0.89 +1.0 147,837 + EX28DRAFT_3483 0.89 -0.2 147,838 - EX28DRAFT_3483 0.89 +0.4 147,839 + EX28DRAFT_3483 0.89 -0.2 147,932 - -1.3 147,935 + +0.6 147,935 + -0.2 147,936 - +0.7 147,936 - -0.5 148,071 - -0.1 148,137 - EX28DRAFT_3484 0.34 -0.3 148,197 - EX28DRAFT_3484 0.65 +0.1 148,217 + EX28DRAFT_3484 0.76 -0.1 148,218 - EX28DRAFT_3484 0.76 -1.2 148,245 + -1.0 148,245 + +0.3 148,418 + +0.4 148,419 - -0.2 148,424 + -0.4 148,647 - EX28DRAFT_3485 0.21 +1.9 148,657 - EX28DRAFT_3485 0.21 -0.1 148,657 - EX28DRAFT_3485 0.21 +0.1 148,707 - EX28DRAFT_3485 0.24 -0.9 148,736 + EX28DRAFT_3485 0.26 -1.5 148,756 + EX28DRAFT_3485 0.27 +0.1 148,805 + EX28DRAFT_3485 0.29 +0.3 148,806 - EX28DRAFT_3485 0.29 +0.9 148,806 - EX28DRAFT_3485 0.29 -1.5 148,806 - EX28DRAFT_3485 0.29 -0.1 148,813 - EX28DRAFT_3485 0.30 -0.4 148,844 + EX28DRAFT_3485 0.31 -0.1 148,876 + EX28DRAFT_3485 0.33 -0.6 148,876 + EX28DRAFT_3485 0.33 +0.1 148,877 - EX28DRAFT_3485 0.33 -0.1 148,891 + EX28DRAFT_3485 0.34 +0.1 148,891 + EX28DRAFT_3485 0.34 -0.1 148,894 + EX28DRAFT_3485 0.34 -0.3 148,928 + EX28DRAFT_3485 0.36 -1.2 148,980 - EX28DRAFT_3485 0.39 +0.3 149,093 - EX28DRAFT_3485 0.45 -1.2 149,096 + EX28DRAFT_3485 0.45 +0.3 149,099 + EX28DRAFT_3485 0.45 +0.5 149,101 - EX28DRAFT_3485 0.45 +0.2 149,119 + EX28DRAFT_3485 0.46 +0.3 149,168 + EX28DRAFT_3485 0.49 -0.3 149,169 - EX28DRAFT_3485 0.49 -0.6 149,171 + EX28DRAFT_3485 0.49 +0.2 149,192 + EX28DRAFT_3485 0.50 -0.5 149,235 - EX28DRAFT_3485 0.53 -0.1 149,328 + EX28DRAFT_3485 0.58 -2.4 149,328 + EX28DRAFT_3485 0.58 -0.4 149,363 + EX28DRAFT_3485 0.60 +0.3 149,364 - EX28DRAFT_3485 0.60 +0.3 149,419 + EX28DRAFT_3485 0.63 -0.1 149,420 - EX28DRAFT_3485 0.63 -0.8 149,437 - EX28DRAFT_3485 0.64 -0.4 149,453 - EX28DRAFT_3485 0.64 -0.5 149,462 + EX28DRAFT_3485 0.65 +1.0 149,522 + EX28DRAFT_3485 0.68 -0.2 149,576 - EX28DRAFT_3485 0.71 -0.1 149,576 - EX28DRAFT_3485 0.71 +0.5 149,591 - EX28DRAFT_3485 0.72 -0.2 149,725 - EX28DRAFT_3485 0.79 +0.8 149,738 + EX28DRAFT_3485 0.80 -0.5 149,868 + EX28DRAFT_3485 0.87 -0.8 149,869 - EX28DRAFT_3485 0.87 -0.2 149,869 - EX28DRAFT_3485 0.87 -0.4 149,869 - EX28DRAFT_3485 0.87 -0.4 149,869 - EX28DRAFT_3485 0.87 -0.0 149,932 - -0.4 149,933 + -0.9 149,933 + -0.0 149,934 - -0.4 149,980 + +1.8 149,980 + -1.6 149,981 - -0.1 149,984 + +1.1 149,985 - +0.0 150,016 - -0.1 150,032 + -1.6 150,033 - -1.0 150,115 + -0.2 150,153 - +1.7 150,162 + -0.3 150,162 + +0.1 150,197 + +0.1 150,202 - +0.1 150,216 + +0.6 150,226 + -0.2 150,260 - -0.2 150,472 + -0.6 150,472 + -0.5 150,473 - +0.2 150,473 - -1.2 150,473 - -0.3 150,473 - -0.2 150,478 - -0.4 150,512 - EX28DRAFT_3487 0.16 -0.3 150,649 - EX28DRAFT_3487 0.45 -0.8 150,769 - EX28DRAFT_3487 0.71 -0.3 150,770 + EX28DRAFT_3487 0.71 -0.6 150,956 + -0.8 150,997 - +0.3 151,023 - +0.2 151,035 + -0.4 151,074 + +0.3 151,075 - -1.0
Or see this region's nucleotide sequence