Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3452 and EX28DRAFT_3453 are separated by 675 nucleotides EX28DRAFT_3453 and EX28DRAFT_3454 are separated by 203 nucleotides
EX28DRAFT_3452: EX28DRAFT_3452 - arginine deiminase (EC 3.5.3.6), at 124,170 to 125,390
_3452
EX28DRAFT_3453: EX28DRAFT_3453 - YhcH/YjgK/YiaL family protein, at 126,066 to 126,518
_3453
EX28DRAFT_3454: EX28DRAFT_3454 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 126,722 to 127,630
_3454
Position (kb) 126
127 Strain fitness (log2 ratio) -1
0
1 at 125.378 kb on - strand at 125.597 kb on - strand at 125.866 kb on + strand at 125.916 kb on + strand at 125.916 kb on + strand at 125.917 kb on - strand at 125.917 kb on - strand at 126.202 kb on - strand, within EX28DRAFT_3453 at 126.489 kb on - strand at 126.526 kb on + strand at 126.631 kb on + strand at 126.632 kb on - strand at 126.653 kb on + strand at 126.653 kb on + strand at 126.654 kb on - strand at 126.654 kb on - strand at 126.656 kb on + strand at 126.656 kb on + strand at 126.656 kb on + strand at 126.657 kb on - strand at 126.657 kb on - strand at 126.657 kb on - strand at 126.657 kb on - strand at 126.904 kb on + strand, within EX28DRAFT_3454 at 127.052 kb on + strand, within EX28DRAFT_3454 at 127.055 kb on + strand, within EX28DRAFT_3454 at 127.056 kb on - strand, within EX28DRAFT_3454 at 127.134 kb on - strand, within EX28DRAFT_3454 at 127.135 kb on + strand, within EX28DRAFT_3454 at 127.135 kb on + strand, within EX28DRAFT_3454 at 127.180 kb on - strand, within EX28DRAFT_3454 at 127.208 kb on - strand, within EX28DRAFT_3454 at 127.208 kb on - strand, within EX28DRAFT_3454 at 127.327 kb on + strand, within EX28DRAFT_3454 at 127.327 kb on + strand, within EX28DRAFT_3454 at 127.443 kb on - strand, within EX28DRAFT_3454 at 127.475 kb on + strand, within EX28DRAFT_3454
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 125,378 - -0.1 125,597 - -1.0 125,866 + +0.1 125,916 + -0.5 125,916 + +0.1 125,917 - -0.4 125,917 - -0.7 126,202 - EX28DRAFT_3453 0.30 -0.3 126,489 - +0.3 126,526 + +0.7 126,631 + -0.2 126,632 - -0.1 126,653 + +0.0 126,653 + -0.5 126,654 - +0.1 126,654 - -0.1 126,656 + +0.3 126,656 + +0.7 126,656 + -1.6 126,657 - -0.1 126,657 - +0.1 126,657 - -0.3 126,657 - +0.2 126,904 + EX28DRAFT_3454 0.20 +0.2 127,052 + EX28DRAFT_3454 0.36 +0.3 127,055 + EX28DRAFT_3454 0.37 -0.5 127,056 - EX28DRAFT_3454 0.37 +0.1 127,134 - EX28DRAFT_3454 0.45 +0.0 127,135 + EX28DRAFT_3454 0.45 +0.3 127,135 + EX28DRAFT_3454 0.45 +0.1 127,180 - EX28DRAFT_3454 0.50 -0.2 127,208 - EX28DRAFT_3454 0.53 -0.5 127,208 - EX28DRAFT_3454 0.53 -0.1 127,327 + EX28DRAFT_3454 0.67 +0.1 127,327 + EX28DRAFT_3454 0.67 -0.2 127,443 - EX28DRAFT_3454 0.79 -0.7 127,475 + EX28DRAFT_3454 0.83 +0.6
Or see this region's nucleotide sequence