Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3414

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3413 and EX28DRAFT_3414 are separated by 133 nucleotidesEX28DRAFT_3414 and EX28DRAFT_3415 are separated by 13 nucleotides EX28DRAFT_3413: EX28DRAFT_3413 - ABC-type sugar transport system, periplasmic component, at 83,594 to 84,550 _3413 EX28DRAFT_3414: EX28DRAFT_3414 - ABC-type sugar transport system, ATPase component, at 84,684 to 86,186 _3414 EX28DRAFT_3415: EX28DRAFT_3415 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 86,200 to 87,222 _3415 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -1 0 1 2at 83.942 kb on - strand, within EX28DRAFT_3413at 83.957 kb on + strand, within EX28DRAFT_3413at 83.957 kb on + strand, within EX28DRAFT_3413at 83.957 kb on + strand, within EX28DRAFT_3413at 83.958 kb on - strand, within EX28DRAFT_3413at 83.958 kb on - strand, within EX28DRAFT_3413at 83.959 kb on + strand, within EX28DRAFT_3413at 83.959 kb on + strand, within EX28DRAFT_3413at 84.286 kb on + strand, within EX28DRAFT_3413at 84.287 kb on - strand, within EX28DRAFT_3413at 84.287 kb on - strand, within EX28DRAFT_3413at 84.317 kb on - strand, within EX28DRAFT_3413at 84.354 kb on - strand, within EX28DRAFT_3413at 84.354 kb on - strand, within EX28DRAFT_3413at 84.494 kb on + strandat 84.494 kb on + strandat 84.495 kb on - strandat 84.549 kb on - strandat 84.840 kb on - strand, within EX28DRAFT_3414at 84.858 kb on + strand, within EX28DRAFT_3414at 84.977 kb on + strand, within EX28DRAFT_3414at 84.977 kb on + strand, within EX28DRAFT_3414at 84.978 kb on - strand, within EX28DRAFT_3414at 85.181 kb on - strand, within EX28DRAFT_3414at 85.181 kb on - strand, within EX28DRAFT_3414at 85.306 kb on + strand, within EX28DRAFT_3414at 85.307 kb on - strand, within EX28DRAFT_3414at 85.307 kb on - strand, within EX28DRAFT_3414at 85.308 kb on + strand, within EX28DRAFT_3414at 85.308 kb on + strand, within EX28DRAFT_3414at 85.308 kb on + strand, within EX28DRAFT_3414at 85.309 kb on - strand, within EX28DRAFT_3414at 85.309 kb on - strand, within EX28DRAFT_3414at 85.309 kb on - strand, within EX28DRAFT_3414at 85.309 kb on - strand, within EX28DRAFT_3414at 85.309 kb on - strand, within EX28DRAFT_3414at 85.309 kb on - strand, within EX28DRAFT_3414at 85.316 kb on - strand, within EX28DRAFT_3414at 85.316 kb on - strand, within EX28DRAFT_3414at 85.661 kb on - strand, within EX28DRAFT_3414at 85.880 kb on + strand, within EX28DRAFT_3414at 86.054 kb on + strandat 86.191 kb on + strandat 86.191 kb on + strandat 86.375 kb on + strand, within EX28DRAFT_3415at 86.375 kb on + strand, within EX28DRAFT_3415at 86.540 kb on + strand, within EX28DRAFT_3415at 86.625 kb on - strand, within EX28DRAFT_3415at 86.625 kb on - strand, within EX28DRAFT_3415at 86.658 kb on + strand, within EX28DRAFT_3415at 86.682 kb on + strand, within EX28DRAFT_3415

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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83,942 - EX28DRAFT_3413 0.36 -0.0
83,957 + EX28DRAFT_3413 0.38 -0.2
83,957 + EX28DRAFT_3413 0.38 -0.5
83,957 + EX28DRAFT_3413 0.38 -0.6
83,958 - EX28DRAFT_3413 0.38 +0.3
83,958 - EX28DRAFT_3413 0.38 -0.6
83,959 + EX28DRAFT_3413 0.38 +0.6
83,959 + EX28DRAFT_3413 0.38 -0.8
84,286 + EX28DRAFT_3413 0.72 +0.3
84,287 - EX28DRAFT_3413 0.72 -0.5
84,287 - EX28DRAFT_3413 0.72 -0.6
84,317 - EX28DRAFT_3413 0.76 -1.2
84,354 - EX28DRAFT_3413 0.79 +0.4
84,354 - EX28DRAFT_3413 0.79 +0.1
84,494 + -0.6
84,494 + -0.6
84,495 - -1.2
84,549 - -1.0
84,840 - EX28DRAFT_3414 0.10 +0.1
84,858 + EX28DRAFT_3414 0.12 -0.2
84,977 + EX28DRAFT_3414 0.19 +0.4
84,977 + EX28DRAFT_3414 0.19 +0.3
84,978 - EX28DRAFT_3414 0.20 -0.3
85,181 - EX28DRAFT_3414 0.33 +0.9
85,181 - EX28DRAFT_3414 0.33 +0.6
85,306 + EX28DRAFT_3414 0.41 +0.7
85,307 - EX28DRAFT_3414 0.41 -0.4
85,307 - EX28DRAFT_3414 0.41 +0.6
85,308 + EX28DRAFT_3414 0.42 +0.2
85,308 + EX28DRAFT_3414 0.42 +1.8
85,308 + EX28DRAFT_3414 0.42 +0.3
85,309 - EX28DRAFT_3414 0.42 +0.2
85,309 - EX28DRAFT_3414 0.42 -0.4
85,309 - EX28DRAFT_3414 0.42 +0.6
85,309 - EX28DRAFT_3414 0.42 -0.6
85,309 - EX28DRAFT_3414 0.42 +1.3
85,309 - EX28DRAFT_3414 0.42 +0.0
85,316 - EX28DRAFT_3414 0.42 -0.4
85,316 - EX28DRAFT_3414 0.42 -0.9
85,661 - EX28DRAFT_3414 0.65 -0.1
85,880 + EX28DRAFT_3414 0.80 +0.5
86,054 + +0.9
86,191 + -0.1
86,191 + -0.4
86,375 + EX28DRAFT_3415 0.17 -0.3
86,375 + EX28DRAFT_3415 0.17 -0.6
86,540 + EX28DRAFT_3415 0.33 +0.6
86,625 - EX28DRAFT_3415 0.42 -1.2
86,625 - EX28DRAFT_3415 0.42 +0.7
86,658 + EX28DRAFT_3415 0.45 +0.4
86,682 + EX28DRAFT_3415 0.47 -0.2

Or see this region's nucleotide sequence