Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3312 and EX28DRAFT_3313 are separated by 330 nucleotides EX28DRAFT_3313 and EX28DRAFT_3314 are separated by 23 nucleotides EX28DRAFT_3314 and EX28DRAFT_3315 are separated by 177 nucleotides EX28DRAFT_3315 and EX28DRAFT_3316 are separated by 139 nucleotides
EX28DRAFT_3312: EX28DRAFT_3312 - Carbonic anhydrase, at 612,276 to 613,019
_3312
EX28DRAFT_3313: EX28DRAFT_3313 - putative TIM-barrel protein, nifR3 family, at 613,350 to 614,315
_3313
EX28DRAFT_3314: EX28DRAFT_3314 - Factor for inversion stimulation Fis, transcriptional activator, at 614,339 to 614,635
_3314
EX28DRAFT_3315: EX28DRAFT_3315 - Protein of unknown function (DUF2556), at 614,813 to 614,977
_3315
EX28DRAFT_3316: EX28DRAFT_3316 - diguanylate cyclase (GGDEF) domain, at 615,117 to 617,198
_3316
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 612.357 kb on + strand, within EX28DRAFT_3312 at 612.358 kb on - strand, within EX28DRAFT_3312 at 612.444 kb on - strand, within EX28DRAFT_3312 at 612.493 kb on - strand, within EX28DRAFT_3312 at 612.530 kb on + strand, within EX28DRAFT_3312 at 612.531 kb on - strand, within EX28DRAFT_3312 at 612.555 kb on - strand, within EX28DRAFT_3312 at 612.572 kb on + strand, within EX28DRAFT_3312 at 612.572 kb on + strand, within EX28DRAFT_3312 at 612.573 kb on - strand, within EX28DRAFT_3312 at 612.582 kb on - strand, within EX28DRAFT_3312 at 612.598 kb on + strand, within EX28DRAFT_3312 at 612.598 kb on + strand, within EX28DRAFT_3312 at 612.599 kb on - strand, within EX28DRAFT_3312 at 612.638 kb on - strand, within EX28DRAFT_3312 at 612.678 kb on - strand, within EX28DRAFT_3312 at 612.745 kb on + strand, within EX28DRAFT_3312 at 612.837 kb on - strand, within EX28DRAFT_3312 at 612.844 kb on - strand, within EX28DRAFT_3312 at 612.904 kb on + strand, within EX28DRAFT_3312 at 612.905 kb on - strand, within EX28DRAFT_3312 at 612.905 kb on - strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.971 kb on + strand at 612.972 kb on - strand at 613.161 kb on + strand at 613.254 kb on - strand at 613.308 kb on + strand at 613.310 kb on + strand at 613.331 kb on + strand at 613.406 kb on + strand at 613.409 kb on + strand at 613.628 kb on + strand, within EX28DRAFT_3313 at 613.757 kb on + strand, within EX28DRAFT_3313 at 613.789 kb on + strand, within EX28DRAFT_3313 at 613.957 kb on + strand, within EX28DRAFT_3313 at 613.992 kb on + strand, within EX28DRAFT_3313 at 613.992 kb on + strand, within EX28DRAFT_3313 at 613.994 kb on + strand, within EX28DRAFT_3313 at 614.067 kb on + strand, within EX28DRAFT_3313 at 614.257 kb on + strand at 614.272 kb on + strand at 614.499 kb on + strand, within EX28DRAFT_3314 at 614.637 kb on - strand at 614.647 kb on + strand at 614.726 kb on + strand at 614.727 kb on - strand at 614.768 kb on + strand at 614.768 kb on + strand at 614.769 kb on - strand at 614.771 kb on - strand at 614.771 kb on - strand at 614.817 kb on + strand at 614.821 kb on + strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.826 kb on - strand at 614.895 kb on + strand, within EX28DRAFT_3315 at 614.926 kb on + strand, within EX28DRAFT_3315 at 615.060 kb on - strand at 615.106 kb on + strand at 615.132 kb on + strand at 615.132 kb on + strand at 615.132 kb on + strand at 615.183 kb on + strand at 615.184 kb on - strand at 615.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 612,357 + EX28DRAFT_3312 0.11 +0.3 612,358 - EX28DRAFT_3312 0.11 -0.2 612,444 - EX28DRAFT_3312 0.23 +0.4 612,493 - EX28DRAFT_3312 0.29 +1.0 612,530 + EX28DRAFT_3312 0.34 -0.0 612,531 - EX28DRAFT_3312 0.34 -0.6 612,555 - EX28DRAFT_3312 0.38 +0.2 612,572 + EX28DRAFT_3312 0.40 +0.6 612,572 + EX28DRAFT_3312 0.40 -0.1 612,573 - EX28DRAFT_3312 0.40 +0.2 612,582 - EX28DRAFT_3312 0.41 +0.7 612,598 + EX28DRAFT_3312 0.43 +0.6 612,598 + EX28DRAFT_3312 0.43 +0.1 612,599 - EX28DRAFT_3312 0.43 +0.7 612,638 - EX28DRAFT_3312 0.49 +0.3 612,678 - EX28DRAFT_3312 0.54 +1.0 612,745 + EX28DRAFT_3312 0.63 -0.4 612,837 - EX28DRAFT_3312 0.75 -0.5 612,844 - EX28DRAFT_3312 0.76 +0.5 612,904 + EX28DRAFT_3312 0.84 -0.0 612,905 - EX28DRAFT_3312 0.85 +0.5 612,905 - EX28DRAFT_3312 0.85 +0.1 612,908 + EX28DRAFT_3312 0.85 +0.7 612,908 + EX28DRAFT_3312 0.85 -0.5 612,908 + EX28DRAFT_3312 0.85 +0.6 612,971 + +0.1 612,972 - -0.2 613,161 + +0.8 613,254 - -0.9 613,308 + +1.5 613,310 + +0.4 613,331 + -0.5 613,406 + +0.7 613,409 + +0.1 613,628 + EX28DRAFT_3313 0.29 -0.8 613,757 + EX28DRAFT_3313 0.42 +0.2 613,789 + EX28DRAFT_3313 0.45 -0.3 613,957 + EX28DRAFT_3313 0.63 +0.4 613,992 + EX28DRAFT_3313 0.66 -0.9 613,992 + EX28DRAFT_3313 0.66 -0.3 613,994 + EX28DRAFT_3313 0.67 +0.1 614,067 + EX28DRAFT_3313 0.74 -1.9 614,257 + +0.4 614,272 + -0.9 614,499 + EX28DRAFT_3314 0.54 -0.7 614,637 - +0.6 614,647 + +0.5 614,726 + +1.0 614,727 - +0.5 614,768 + +0.4 614,768 + -0.3 614,769 - -2.9 614,771 - +0.1 614,771 - +0.5 614,817 + +0.7 614,821 + +0.3 614,822 - -1.2 614,822 - +0.2 614,822 - -1.8 614,822 - -0.5 614,826 - -0.0 614,895 + EX28DRAFT_3315 0.50 -3.0 614,926 + EX28DRAFT_3315 0.68 +0.6 615,060 - +0.4 615,106 + +0.0 615,132 + -0.0 615,132 + -0.8 615,132 + +0.3 615,183 + +0.2 615,184 - +0.4 615,260 + +0.4
Or see this region's nucleotide sequence