Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3247

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3245 and EX28DRAFT_3246 overlap by 1 nucleotidesEX28DRAFT_3246 and EX28DRAFT_3247 are separated by 18 nucleotidesEX28DRAFT_3247 and EX28DRAFT_3248 are separated by 4 nucleotidesEX28DRAFT_3248 and EX28DRAFT_3249 are separated by 7 nucleotides EX28DRAFT_3245: EX28DRAFT_3245 - Predicted NTP binding protein (contains STAS domain), at 540,376 to 540,669 _3245 EX28DRAFT_3246: EX28DRAFT_3246 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 540,669 to 541,304 _3246 EX28DRAFT_3247: EX28DRAFT_3247 - mce related protein, at 541,323 to 541,871 _3247 EX28DRAFT_3248: EX28DRAFT_3248 - ABC transport permease subunit, at 541,876 to 542,658 _3248 EX28DRAFT_3249: EX28DRAFT_3249 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 542,666 to 543,478 _3249 Position (kb) 541 542Strain fitness (log2 ratio) -2 -1 0 1at 540.360 kb on + strandat 540.408 kb on - strand, within EX28DRAFT_3245at 540.538 kb on + strand, within EX28DRAFT_3245at 540.671 kb on - strandat 540.671 kb on - strandat 540.671 kb on - strandat 540.917 kb on + strand, within EX28DRAFT_3246at 540.955 kb on + strand, within EX28DRAFT_3246at 540.955 kb on + strand, within EX28DRAFT_3246at 540.956 kb on - strand, within EX28DRAFT_3246at 540.971 kb on - strand, within EX28DRAFT_3246at 541.027 kb on + strand, within EX28DRAFT_3246at 541.061 kb on - strand, within EX28DRAFT_3246at 541.061 kb on - strand, within EX28DRAFT_3246at 541.061 kb on - strand, within EX28DRAFT_3246at 541.063 kb on + strand, within EX28DRAFT_3246at 541.064 kb on - strand, within EX28DRAFT_3246at 541.090 kb on + strand, within EX28DRAFT_3246at 541.151 kb on + strand, within EX28DRAFT_3246at 541.164 kb on - strand, within EX28DRAFT_3246at 541.322 kb on - strandat 541.322 kb on - strandat 541.595 kb on + strand, within EX28DRAFT_3247at 541.639 kb on + strand, within EX28DRAFT_3247at 541.659 kb on - strand, within EX28DRAFT_3247at 541.659 kb on - strand, within EX28DRAFT_3247at 541.668 kb on + strand, within EX28DRAFT_3247at 541.668 kb on + strand, within EX28DRAFT_3247at 541.744 kb on + strand, within EX28DRAFT_3247at 541.744 kb on + strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.837 kb on - strandat 541.837 kb on - strandat 541.939 kb on + strandat 541.940 kb on - strandat 541.940 kb on - strandat 541.947 kb on + strandat 541.948 kb on - strandat 541.948 kb on - strandat 541.948 kb on - strandat 542.417 kb on + strand, within EX28DRAFT_3248at 542.417 kb on + strand, within EX28DRAFT_3248at 542.417 kb on + strand, within EX28DRAFT_3248at 542.418 kb on - strand, within EX28DRAFT_3248at 542.418 kb on - strand, within EX28DRAFT_3248at 542.436 kb on - strand, within EX28DRAFT_3248at 542.458 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.513 kb on + strand, within EX28DRAFT_3248at 542.513 kb on + strand, within EX28DRAFT_3248at 542.514 kb on - strand, within EX28DRAFT_3248at 542.650 kb on + strandat 542.650 kb on + strandat 542.667 kb on + strandat 542.675 kb on + strandat 542.697 kb on + strandat 542.830 kb on + strand, within EX28DRAFT_3249at 542.832 kb on + strand, within EX28DRAFT_3249at 542.855 kb on + strand, within EX28DRAFT_3249at 542.864 kb on + strand, within EX28DRAFT_3249

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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540,360 + +0.0
540,408 - EX28DRAFT_3245 0.11 -0.6
540,538 + EX28DRAFT_3245 0.55 -0.2
540,671 - +0.6
540,671 - -0.3
540,671 - -0.1
540,917 + EX28DRAFT_3246 0.39 +0.2
540,955 + EX28DRAFT_3246 0.45 -1.4
540,955 + EX28DRAFT_3246 0.45 -0.7
540,956 - EX28DRAFT_3246 0.45 -0.1
540,971 - EX28DRAFT_3246 0.47 -1.8
541,027 + EX28DRAFT_3246 0.56 -0.6
541,061 - EX28DRAFT_3246 0.62 -1.2
541,061 - EX28DRAFT_3246 0.62 -0.3
541,061 - EX28DRAFT_3246 0.62 -0.3
541,063 + EX28DRAFT_3246 0.62 -1.4
541,064 - EX28DRAFT_3246 0.62 -0.0
541,090 + EX28DRAFT_3246 0.66 +0.0
541,151 + EX28DRAFT_3246 0.76 -1.2
541,164 - EX28DRAFT_3246 0.78 -0.3
541,322 - +0.3
541,322 - -0.3
541,595 + EX28DRAFT_3247 0.50 -2.4
541,639 + EX28DRAFT_3247 0.58 -0.2
541,659 - EX28DRAFT_3247 0.61 -0.8
541,659 - EX28DRAFT_3247 0.61 +0.3
541,668 + EX28DRAFT_3247 0.63 -0.6
541,668 + EX28DRAFT_3247 0.63 -0.8
541,744 + EX28DRAFT_3247 0.77 -0.6
541,744 + EX28DRAFT_3247 0.77 -0.7
541,745 - EX28DRAFT_3247 0.77 +0.4
541,745 - EX28DRAFT_3247 0.77 -0.8
541,745 - EX28DRAFT_3247 0.77 -0.2
541,837 - -0.1
541,837 - -1.5
541,939 + -1.0
541,940 - -1.5
541,940 - -1.4
541,947 + -0.5
541,948 - -1.3
541,948 - -2.7
541,948 - -1.7
542,417 + EX28DRAFT_3248 0.69 -0.4
542,417 + EX28DRAFT_3248 0.69 -0.8
542,417 + EX28DRAFT_3248 0.69 +0.2
542,418 - EX28DRAFT_3248 0.69 -1.4
542,418 - EX28DRAFT_3248 0.69 -2.3
542,436 - EX28DRAFT_3248 0.72 -1.7
542,458 - EX28DRAFT_3248 0.74 -0.5
542,512 - EX28DRAFT_3248 0.81 -1.0
542,512 - EX28DRAFT_3248 0.81 -1.9
542,512 - EX28DRAFT_3248 0.81 -2.7
542,513 + EX28DRAFT_3248 0.81 -0.5
542,513 + EX28DRAFT_3248 0.81 -0.5
542,514 - EX28DRAFT_3248 0.81 -2.6
542,650 + -0.1
542,650 + -1.0
542,667 + -0.4
542,675 + -1.5
542,697 + +0.3
542,830 + EX28DRAFT_3249 0.20 -0.4
542,832 + EX28DRAFT_3249 0.20 -1.2
542,855 + EX28DRAFT_3249 0.23 +1.6
542,864 + EX28DRAFT_3249 0.24 -0.3

Or see this region's nucleotide sequence