Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3231 and EX28DRAFT_3232 are separated by 151 nucleotides EX28DRAFT_3232 and EX28DRAFT_3233 are separated by 74 nucleotides EX28DRAFT_3233 and EX28DRAFT_3234 are separated by 30 nucleotides EX28DRAFT_3234 and EX28DRAFT_3235 are separated by 2 nucleotides EX28DRAFT_3235 and EX28DRAFT_3236 overlap by 4 nucleotides
EX28DRAFT_3231: EX28DRAFT_3231 - putative RNA-binding protein, YhbY family, at 529,675 to 530,007
_3231
EX28DRAFT_3232: EX28DRAFT_3232 - transcription elongation factor GreA, at 530,159 to 530,635
_3232
EX28DRAFT_3233: EX28DRAFT_3233 - RNA, at 530,710 to 530,833
_3233
EX28DRAFT_3234: EX28DRAFT_3234 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 530,864 to 532,297
_3234
EX28DRAFT_3235: EX28DRAFT_3235 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 532,300 to 532,962
_3235
EX28DRAFT_3236: EX28DRAFT_3236 - Signal transduction histidine kinase, at 532,959 to 534,002
_3236
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -1
0
1
2 at 529.933 kb on - strand, within EX28DRAFT_3231 at 529.933 kb on - strand, within EX28DRAFT_3231 at 529.951 kb on - strand, within EX28DRAFT_3231 at 529.978 kb on - strand at 530.093 kb on + strand at 530.144 kb on + strand at 530.160 kb on + strand at 530.161 kb on - strand at 530.368 kb on + strand, within EX28DRAFT_3232 at 530.390 kb on - strand, within EX28DRAFT_3232 at 530.444 kb on - strand, within EX28DRAFT_3232 at 530.450 kb on - strand, within EX28DRAFT_3232 at 530.453 kb on - strand, within EX28DRAFT_3232 at 530.613 kb on - strand at 530.613 kb on - strand at 530.641 kb on - strand at 530.642 kb on + strand at 530.643 kb on - strand at 530.765 kb on + strand, within EX28DRAFT_3233 at 530.790 kb on - strand, within EX28DRAFT_3233 at 530.826 kb on - strand at 530.826 kb on - strand at 530.829 kb on - strand at 530.905 kb on - strand at 530.939 kb on + strand at 530.940 kb on - strand at 530.940 kb on - strand at 530.944 kb on + strand at 530.944 kb on + strand at 531.196 kb on + strand, within EX28DRAFT_3234 at 531.376 kb on + strand, within EX28DRAFT_3234 at 531.424 kb on - strand, within EX28DRAFT_3234 at 531.623 kb on + strand, within EX28DRAFT_3234 at 531.666 kb on + strand, within EX28DRAFT_3234 at 531.666 kb on + strand, within EX28DRAFT_3234 at 531.756 kb on + strand, within EX28DRAFT_3234 at 531.804 kb on + strand, within EX28DRAFT_3234 at 531.805 kb on - strand, within EX28DRAFT_3234 at 531.914 kb on - strand, within EX28DRAFT_3234 at 531.914 kb on - strand, within EX28DRAFT_3234 at 531.917 kb on - strand, within EX28DRAFT_3234 at 531.950 kb on - strand, within EX28DRAFT_3234 at 531.990 kb on - strand, within EX28DRAFT_3234 at 532.015 kb on - strand, within EX28DRAFT_3234 at 532.136 kb on + strand, within EX28DRAFT_3234 at 532.137 kb on - strand, within EX28DRAFT_3234 at 532.194 kb on - strand at 532.194 kb on - strand at 532.240 kb on + strand at 532.272 kb on - strand at 532.272 kb on - strand at 532.274 kb on - strand at 532.284 kb on - strand at 532.291 kb on + strand at 532.291 kb on + strand at 532.296 kb on - strand at 532.307 kb on + strand at 532.307 kb on + strand at 532.307 kb on + strand at 532.308 kb on - strand at 532.313 kb on + strand at 532.314 kb on - strand at 532.560 kb on + strand, within EX28DRAFT_3235 at 532.560 kb on + strand, within EX28DRAFT_3235 at 532.665 kb on + strand, within EX28DRAFT_3235 at 532.671 kb on + strand, within EX28DRAFT_3235 at 532.677 kb on - strand, within EX28DRAFT_3235 at 532.693 kb on - strand, within EX28DRAFT_3235 at 532.721 kb on + strand, within EX28DRAFT_3235 at 532.830 kb on + strand, within EX28DRAFT_3235 at 532.831 kb on - strand, within EX28DRAFT_3235 at 532.831 kb on - strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.863 kb on + strand, within EX28DRAFT_3235 at 533.023 kb on + strand at 533.229 kb on - strand, within EX28DRAFT_3236 at 533.269 kb on + strand, within EX28DRAFT_3236 at 533.269 kb on + strand, within EX28DRAFT_3236 at 533.270 kb on - strand, within EX28DRAFT_3236 at 533.270 kb on - strand, within EX28DRAFT_3236 at 533.282 kb on + strand, within EX28DRAFT_3236 at 533.282 kb on + strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.287 kb on - strand, within EX28DRAFT_3236 at 533.287 kb on - strand, within EX28DRAFT_3236
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 529,933 - EX28DRAFT_3231 0.77 +0.7 529,933 - EX28DRAFT_3231 0.77 +0.2 529,951 - EX28DRAFT_3231 0.83 +0.3 529,978 - +0.0 530,093 + +0.3 530,144 + -0.6 530,160 + +0.3 530,161 - -0.1 530,368 + EX28DRAFT_3232 0.44 +0.1 530,390 - EX28DRAFT_3232 0.48 -0.8 530,444 - EX28DRAFT_3232 0.60 -0.6 530,450 - EX28DRAFT_3232 0.61 -0.1 530,453 - EX28DRAFT_3232 0.62 -0.3 530,613 - -0.1 530,613 - -0.4 530,641 - -0.3 530,642 + +0.1 530,643 - +0.5 530,765 + EX28DRAFT_3233 0.44 +0.5 530,790 - EX28DRAFT_3233 0.65 +1.0 530,826 - -1.1 530,826 - -0.1 530,829 - +1.0 530,905 - +0.6 530,939 + -1.4 530,940 - -1.3 530,940 - -1.2 530,944 + -0.2 530,944 + -0.5 531,196 + EX28DRAFT_3234 0.23 +1.1 531,376 + EX28DRAFT_3234 0.36 -0.2 531,424 - EX28DRAFT_3234 0.39 +0.8 531,623 + EX28DRAFT_3234 0.53 -0.2 531,666 + EX28DRAFT_3234 0.56 +1.9 531,666 + EX28DRAFT_3234 0.56 +0.6 531,756 + EX28DRAFT_3234 0.62 -0.4 531,804 + EX28DRAFT_3234 0.66 +1.1 531,805 - EX28DRAFT_3234 0.66 +0.3 531,914 - EX28DRAFT_3234 0.73 -0.3 531,914 - EX28DRAFT_3234 0.73 +0.6 531,917 - EX28DRAFT_3234 0.73 -0.1 531,950 - EX28DRAFT_3234 0.76 -0.2 531,990 - EX28DRAFT_3234 0.79 -0.3 532,015 - EX28DRAFT_3234 0.80 +0.3 532,136 + EX28DRAFT_3234 0.89 +0.1 532,137 - EX28DRAFT_3234 0.89 +0.0 532,194 - -0.4 532,194 - +0.1 532,240 + +0.3 532,272 - -0.1 532,272 - -0.5 532,274 - +0.1 532,284 - +0.9 532,291 + +0.0 532,291 + -0.9 532,296 - -0.9 532,307 + -0.3 532,307 + -0.5 532,307 + +0.3 532,308 - -0.6 532,313 + +0.2 532,314 - +0.7 532,560 + EX28DRAFT_3235 0.39 +0.4 532,560 + EX28DRAFT_3235 0.39 -1.1 532,665 + EX28DRAFT_3235 0.55 +0.3 532,671 + EX28DRAFT_3235 0.56 -0.3 532,677 - EX28DRAFT_3235 0.57 +0.6 532,693 - EX28DRAFT_3235 0.59 -0.3 532,721 + EX28DRAFT_3235 0.63 +0.1 532,830 + EX28DRAFT_3235 0.80 -0.4 532,831 - EX28DRAFT_3235 0.80 -0.0 532,831 - EX28DRAFT_3235 0.80 -0.8 532,834 + EX28DRAFT_3235 0.81 -0.2 532,834 + EX28DRAFT_3235 0.81 +0.8 532,834 + EX28DRAFT_3235 0.81 -0.3 532,834 + EX28DRAFT_3235 0.81 -0.1 532,863 + EX28DRAFT_3235 0.85 -0.2 533,023 + +0.5 533,229 - EX28DRAFT_3236 0.26 -1.1 533,269 + EX28DRAFT_3236 0.30 +1.4 533,269 + EX28DRAFT_3236 0.30 -0.3 533,270 - EX28DRAFT_3236 0.30 -0.5 533,270 - EX28DRAFT_3236 0.30 -0.6 533,282 + EX28DRAFT_3236 0.31 -0.1 533,282 + EX28DRAFT_3236 0.31 -0.2 533,283 - EX28DRAFT_3236 0.31 +0.6 533,283 - EX28DRAFT_3236 0.31 +0.4 533,283 - EX28DRAFT_3236 0.31 -1.0 533,287 - EX28DRAFT_3236 0.31 -0.3 533,287 - EX28DRAFT_3236 0.31 -1.0
Or see this region's nucleotide sequence