Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3210

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3209 and EX28DRAFT_3210 are separated by 62 nucleotidesEX28DRAFT_3210 and EX28DRAFT_3211 are separated by 142 nucleotides EX28DRAFT_3209: EX28DRAFT_3209 - luciferase family oxidoreductase, group 1, at 507,414 to 508,421 _3209 EX28DRAFT_3210: EX28DRAFT_3210 - aromatic amino acid transport protein, at 508,484 to 509,728 _3210 EX28DRAFT_3211: EX28DRAFT_3211 - Superfamily II DNA and RNA helicases, at 509,871 to 511,766 _3211 Position (kb) 508 509 510Strain fitness (log2 ratio) -2 -1 0 1at 507.566 kb on + strand, within EX28DRAFT_3209at 507.566 kb on + strand, within EX28DRAFT_3209at 507.567 kb on - strand, within EX28DRAFT_3209at 507.567 kb on - strand, within EX28DRAFT_3209at 507.623 kb on + strand, within EX28DRAFT_3209at 507.624 kb on - strand, within EX28DRAFT_3209at 507.624 kb on - strand, within EX28DRAFT_3209at 507.624 kb on - strand, within EX28DRAFT_3209at 507.736 kb on + strand, within EX28DRAFT_3209at 508.083 kb on - strand, within EX28DRAFT_3209at 508.131 kb on - strand, within EX28DRAFT_3209at 508.233 kb on + strand, within EX28DRAFT_3209at 508.334 kb on + strandat 508.334 kb on + strandat 508.334 kb on + strandat 508.492 kb on - strandat 508.616 kb on - strand, within EX28DRAFT_3210at 508.625 kb on - strand, within EX28DRAFT_3210at 508.625 kb on - strand, within EX28DRAFT_3210at 508.661 kb on - strand, within EX28DRAFT_3210at 508.661 kb on - strand, within EX28DRAFT_3210at 508.692 kb on + strand, within EX28DRAFT_3210at 508.693 kb on - strand, within EX28DRAFT_3210at 509.010 kb on + strand, within EX28DRAFT_3210at 509.010 kb on + strand, within EX28DRAFT_3210at 509.010 kb on + strand, within EX28DRAFT_3210at 509.011 kb on - strand, within EX28DRAFT_3210at 509.079 kb on + strand, within EX28DRAFT_3210at 509.080 kb on - strand, within EX28DRAFT_3210at 509.080 kb on - strand, within EX28DRAFT_3210at 509.080 kb on - strand, within EX28DRAFT_3210at 509.258 kb on + strand, within EX28DRAFT_3210at 509.261 kb on + strand, within EX28DRAFT_3210at 509.430 kb on + strand, within EX28DRAFT_3210at 509.430 kb on + strand, within EX28DRAFT_3210at 509.431 kb on - strand, within EX28DRAFT_3210at 509.431 kb on - strand, within EX28DRAFT_3210at 509.431 kb on - strand, within EX28DRAFT_3210at 509.435 kb on + strand, within EX28DRAFT_3210at 509.436 kb on - strand, within EX28DRAFT_3210at 509.436 kb on - strand, within EX28DRAFT_3210at 509.436 kb on - strand, within EX28DRAFT_3210at 509.523 kb on + strand, within EX28DRAFT_3210at 509.841 kb on - strandat 509.843 kb on - strandat 509.853 kb on - strandat 509.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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507,566 + EX28DRAFT_3209 0.15 +0.1
507,566 + EX28DRAFT_3209 0.15 +0.0
507,567 - EX28DRAFT_3209 0.15 +0.2
507,567 - EX28DRAFT_3209 0.15 -0.2
507,623 + EX28DRAFT_3209 0.21 -0.3
507,624 - EX28DRAFT_3209 0.21 +0.2
507,624 - EX28DRAFT_3209 0.21 +0.4
507,624 - EX28DRAFT_3209 0.21 -1.4
507,736 + EX28DRAFT_3209 0.32 +0.3
508,083 - EX28DRAFT_3209 0.66 +0.1
508,131 - EX28DRAFT_3209 0.71 -0.6
508,233 + EX28DRAFT_3209 0.81 -0.1
508,334 + +1.0
508,334 + -0.9
508,334 + +1.5
508,492 - +0.5
508,616 - EX28DRAFT_3210 0.11 +0.4
508,625 - EX28DRAFT_3210 0.11 -0.3
508,625 - EX28DRAFT_3210 0.11 +1.7
508,661 - EX28DRAFT_3210 0.14 +0.2
508,661 - EX28DRAFT_3210 0.14 -0.8
508,692 + EX28DRAFT_3210 0.17 +0.4
508,693 - EX28DRAFT_3210 0.17 +0.0
509,010 + EX28DRAFT_3210 0.42 -2.2
509,010 + EX28DRAFT_3210 0.42 +0.6
509,010 + EX28DRAFT_3210 0.42 -0.1
509,011 - EX28DRAFT_3210 0.42 +0.2
509,079 + EX28DRAFT_3210 0.48 +0.2
509,080 - EX28DRAFT_3210 0.48 +0.9
509,080 - EX28DRAFT_3210 0.48 +0.4
509,080 - EX28DRAFT_3210 0.48 +0.1
509,258 + EX28DRAFT_3210 0.62 +0.0
509,261 + EX28DRAFT_3210 0.62 -2.5
509,430 + EX28DRAFT_3210 0.76 -0.2
509,430 + EX28DRAFT_3210 0.76 -0.2
509,431 - EX28DRAFT_3210 0.76 -0.2
509,431 - EX28DRAFT_3210 0.76 -0.5
509,431 - EX28DRAFT_3210 0.76 +0.7
509,435 + EX28DRAFT_3210 0.76 -0.2
509,436 - EX28DRAFT_3210 0.76 +0.4
509,436 - EX28DRAFT_3210 0.76 +0.2
509,436 - EX28DRAFT_3210 0.76 +0.1
509,523 + EX28DRAFT_3210 0.83 +0.1
509,841 - +0.2
509,843 - -0.3
509,853 - +0.9
509,866 - +0.4

Or see this region's nucleotide sequence