Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3200 and EX28DRAFT_3201 are separated by 41 nucleotides EX28DRAFT_3201 and EX28DRAFT_3202 are separated by 128 nucleotides EX28DRAFT_3202 and EX28DRAFT_3203 overlap by 21 nucleotides
EX28DRAFT_3200: EX28DRAFT_3200 - Predicted permeases, at 501,106 to 502,143
_3200
EX28DRAFT_3201: EX28DRAFT_3201 - Predicted nucleoside-diphosphate-sugar epimerases, at 502,185 to 502,829
_3201
EX28DRAFT_3202: EX28DRAFT_3202 - intracellular protease, PfpI family, at 502,958 to 503,476
_3202
EX28DRAFT_3203: EX28DRAFT_3203 - Uncharacterized protein conserved in bacteria, at 503,456 to 503,890
_3203
Position (kb) 502
503 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 501.193 kb on - strand at 501.193 kb on - strand at 501.193 kb on - strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.235 kb on - strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.654 kb on + strand, within EX28DRAFT_3200 at 501.862 kb on - strand, within EX28DRAFT_3200 at 501.984 kb on + strand, within EX28DRAFT_3200 at 502.031 kb on + strand, within EX28DRAFT_3200 at 502.143 kb on + strand at 502.144 kb on - strand at 502.144 kb on - strand at 502.160 kb on + strand at 502.160 kb on + strand at 502.161 kb on - strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.164 kb on - strand at 502.164 kb on - strand at 502.164 kb on - strand at 502.164 kb on - strand at 502.164 kb on - strand at 502.168 kb on + strand at 502.230 kb on - strand at 502.566 kb on - strand, within EX28DRAFT_3201 at 502.568 kb on - strand, within EX28DRAFT_3201 at 502.581 kb on - strand, within EX28DRAFT_3201 at 502.744 kb on + strand, within EX28DRAFT_3201 at 502.744 kb on + strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.812 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.895 kb on + strand at 502.895 kb on + strand at 502.896 kb on - strand at 502.901 kb on + strand at 502.901 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.906 kb on - strand at 502.906 kb on - strand at 502.906 kb on - strand at 502.909 kb on + strand at 503.474 kb on + strand at 503.590 kb on - strand, within EX28DRAFT_3203 at 503.590 kb on - strand, within EX28DRAFT_3203 at 503.645 kb on - strand, within EX28DRAFT_3203 at 503.761 kb on - strand, within EX28DRAFT_3203 at 503.784 kb on + strand, within EX28DRAFT_3203 at 503.784 kb on + strand, within EX28DRAFT_3203 at 503.785 kb on - strand, within EX28DRAFT_3203 at 503.787 kb on + strand, within EX28DRAFT_3203 at 503.787 kb on + strand, within EX28DRAFT_3203 at 503.790 kb on + strand, within EX28DRAFT_3203 at 503.791 kb on - strand, within EX28DRAFT_3203
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 501,193 - -0.1 501,193 - +0.4 501,193 - +1.3 501,205 - -0.2 501,205 - -0.2 501,235 - EX28DRAFT_3200 0.12 -0.2 501,440 + EX28DRAFT_3200 0.32 +0.4 501,440 + EX28DRAFT_3200 0.32 -0.9 501,440 + EX28DRAFT_3200 0.32 +0.0 501,441 - EX28DRAFT_3200 0.32 -1.3 501,441 - EX28DRAFT_3200 0.32 +0.3 501,441 - EX28DRAFT_3200 0.32 -1.0 501,441 - EX28DRAFT_3200 0.32 +0.2 501,654 + EX28DRAFT_3200 0.53 +0.0 501,862 - EX28DRAFT_3200 0.73 +0.4 501,984 + EX28DRAFT_3200 0.85 -0.5 502,031 + EX28DRAFT_3200 0.89 +0.4 502,143 + +0.3 502,144 - +0.4 502,144 - -0.3 502,160 + +0.8 502,160 + -0.1 502,161 - -0.3 502,163 + +1.0 502,163 + +0.7 502,163 + -0.4 502,163 + -0.3 502,163 + +0.7 502,163 + -0.5 502,163 + -0.4 502,164 - +0.4 502,164 - -0.7 502,164 - -0.2 502,164 - -0.4 502,164 - +0.2 502,168 + -0.5 502,230 - +0.3 502,566 - EX28DRAFT_3201 0.59 +0.1 502,568 - EX28DRAFT_3201 0.59 +0.7 502,581 - EX28DRAFT_3201 0.61 -0.1 502,744 + EX28DRAFT_3201 0.87 -1.7 502,744 + EX28DRAFT_3201 0.87 -1.5 502,745 - EX28DRAFT_3201 0.87 +0.8 502,745 - EX28DRAFT_3201 0.87 +0.1 502,745 - EX28DRAFT_3201 0.87 -0.9 502,745 - EX28DRAFT_3201 0.87 -1.0 502,745 - EX28DRAFT_3201 0.87 -0.1 502,745 - EX28DRAFT_3201 0.87 -1.2 502,745 - EX28DRAFT_3201 0.87 +0.6 502,812 - -3.8 502,885 - -0.5 502,885 - -0.7 502,885 - +0.3 502,885 - +0.8 502,885 - -1.7 502,885 - -0.4 502,895 + +0.1 502,895 + +0.3 502,896 - +0.1 502,901 + -2.0 502,901 + +1.7 502,905 + +0.4 502,905 + +0.8 502,905 + +0.2 502,905 + +1.2 502,906 - -0.3 502,906 - +0.3 502,906 - -0.1 502,909 + +0.1 503,474 + +0.9 503,590 - EX28DRAFT_3203 0.31 -0.8 503,590 - EX28DRAFT_3203 0.31 -0.9 503,645 - EX28DRAFT_3203 0.43 +1.3 503,761 - EX28DRAFT_3203 0.70 +2.0 503,784 + EX28DRAFT_3203 0.75 +0.6 503,784 + EX28DRAFT_3203 0.75 -0.6 503,785 - EX28DRAFT_3203 0.76 -0.5 503,787 + EX28DRAFT_3203 0.76 -0.0 503,787 + EX28DRAFT_3203 0.76 +0.2 503,790 + EX28DRAFT_3203 0.77 -0.6 503,791 - EX28DRAFT_3203 0.77 +0.2
Or see this region's nucleotide sequence