Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3196 and EX28DRAFT_3197 overlap by 43 nucleotides EX28DRAFT_3197 and EX28DRAFT_3198 are separated by 21 nucleotides EX28DRAFT_3198 and EX28DRAFT_3199 are separated by 9 nucleotides EX28DRAFT_3199 and EX28DRAFT_3200 are separated by 67 nucleotides
EX28DRAFT_3196: EX28DRAFT_3196 - LppC putative lipoprotein, at 497,326 to 499,488
_3196
EX28DRAFT_3197: EX28DRAFT_3197 - TIGR00252 family protein, at 499,446 to 499,841
_3197
EX28DRAFT_3198: EX28DRAFT_3198 - Phosphoheptose isomerase, at 499,863 to 500,453
_3198
EX28DRAFT_3199: EX28DRAFT_3199 - Predicted periplasmic or secreted lipoprotein, at 500,463 to 501,038
_3199
EX28DRAFT_3200: EX28DRAFT_3200 - Predicted permeases, at 501,106 to 502,143
_3200
Position (kb) 499
500
501 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 498.921 kb on - strand, within EX28DRAFT_3196 at 499.066 kb on + strand, within EX28DRAFT_3196 at 499.284 kb on - strand at 499.284 kb on - strand at 499.284 kb on - strand at 499.442 kb on + strand at 499.442 kb on + strand at 499.443 kb on - strand at 499.457 kb on - strand at 499.486 kb on + strand at 499.508 kb on + strand, within EX28DRAFT_3197 at 499.633 kb on + strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.742 kb on + strand, within EX28DRAFT_3197 at 499.757 kb on + strand, within EX28DRAFT_3197 at 499.815 kb on - strand at 499.839 kb on + strand at 499.840 kb on - strand at 499.840 kb on - strand at 499.850 kb on + strand at 499.851 kb on - strand at 499.878 kb on - strand at 500.099 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.388 kb on - strand, within EX28DRAFT_3198 at 500.388 kb on - strand, within EX28DRAFT_3198 at 500.452 kb on - strand at 500.462 kb on + strand at 500.492 kb on + strand at 500.492 kb on + strand at 500.492 kb on + strand at 500.493 kb on - strand at 500.519 kb on + strand at 500.520 kb on - strand at 500.520 kb on - strand at 500.686 kb on - strand, within EX28DRAFT_3199 at 500.794 kb on + strand, within EX28DRAFT_3199 at 500.794 kb on + strand, within EX28DRAFT_3199 at 500.794 kb on + strand, within EX28DRAFT_3199 at 501.024 kb on - strand at 501.027 kb on + strand at 501.027 kb on + strand at 501.027 kb on + strand at 501.027 kb on + strand at 501.027 kb on + strand at 501.028 kb on - strand at 501.028 kb on - strand at 501.117 kb on + strand at 501.117 kb on + strand at 501.118 kb on - strand at 501.121 kb on - strand at 501.121 kb on - strand at 501.193 kb on - strand at 501.193 kb on - strand at 501.193 kb on - strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.235 kb on - strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 498,921 - EX28DRAFT_3196 0.74 -0.2 499,066 + EX28DRAFT_3196 0.80 -0.0 499,284 - -0.1 499,284 - -0.2 499,284 - +0.4 499,442 + +0.7 499,442 + -0.0 499,443 - +0.3 499,457 - -0.4 499,486 + +0.3 499,508 + EX28DRAFT_3197 0.16 -0.7 499,633 + EX28DRAFT_3197 0.47 -0.6 499,704 - EX28DRAFT_3197 0.65 -0.4 499,704 - EX28DRAFT_3197 0.65 +0.6 499,704 - EX28DRAFT_3197 0.65 +0.3 499,742 + EX28DRAFT_3197 0.75 +0.9 499,757 + EX28DRAFT_3197 0.79 -0.1 499,815 - -0.1 499,839 + +0.5 499,840 - +1.4 499,840 - -0.0 499,850 + -0.1 499,851 - +0.7 499,878 - +0.1 500,099 + EX28DRAFT_3198 0.40 +0.6 500,387 + EX28DRAFT_3198 0.89 -0.0 500,387 + EX28DRAFT_3198 0.89 +0.3 500,387 + EX28DRAFT_3198 0.89 -0.3 500,387 + EX28DRAFT_3198 0.89 +0.1 500,387 + EX28DRAFT_3198 0.89 +0.5 500,387 + EX28DRAFT_3198 0.89 +0.7 500,388 - EX28DRAFT_3198 0.89 +1.4 500,388 - EX28DRAFT_3198 0.89 +1.5 500,452 - +0.1 500,462 + +0.1 500,492 + +0.1 500,492 + -0.9 500,492 + +0.2 500,493 - -0.4 500,519 + -0.0 500,520 - -0.6 500,520 - -0.0 500,686 - EX28DRAFT_3199 0.39 +0.3 500,794 + EX28DRAFT_3199 0.57 -1.0 500,794 + EX28DRAFT_3199 0.57 -4.7 500,794 + EX28DRAFT_3199 0.57 -1.2 501,024 - -0.1 501,027 + +0.5 501,027 + +1.7 501,027 + +0.6 501,027 + -0.6 501,027 + +0.2 501,028 - +0.2 501,028 - -0.7 501,117 + +0.1 501,117 + -0.1 501,118 - -1.1 501,121 - -0.0 501,121 - +0.6 501,193 - -0.1 501,193 - +0.4 501,193 - +1.3 501,205 - -0.2 501,205 - -0.2 501,235 - EX28DRAFT_3200 0.12 -0.2 501,440 + EX28DRAFT_3200 0.32 +0.4 501,440 + EX28DRAFT_3200 0.32 -0.9 501,440 + EX28DRAFT_3200 0.32 +0.0 501,441 - EX28DRAFT_3200 0.32 -1.3 501,441 - EX28DRAFT_3200 0.32 +0.3 501,441 - EX28DRAFT_3200 0.32 -1.0 501,441 - EX28DRAFT_3200 0.32 +0.2
Or see this region's nucleotide sequence