Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3144 and EX28DRAFT_3145 overlap by 4 nucleotides EX28DRAFT_3145 and EX28DRAFT_3146 are separated by 11 nucleotides EX28DRAFT_3146 and EX28DRAFT_3147 are separated by 1 nucleotides EX28DRAFT_3147 and EX28DRAFT_3148 are separated by 0 nucleotides
EX28DRAFT_3144: EX28DRAFT_3144 - Uncharacterized conserved protein, at 444,828 to 445,121
_3144
EX28DRAFT_3145: EX28DRAFT_3145 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 445,118 to 446,005
_3145
EX28DRAFT_3146: EX28DRAFT_3146 - ABC-type sugar transport system, periplasmic component, at 446,017 to 447,018
_3146
EX28DRAFT_3147: EX28DRAFT_3147 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 447,020 to 447,997
_3147
EX28DRAFT_3148: EX28DRAFT_3148 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 447,998 to 449,029
_3148
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 445.091 kb on + strand, within EX28DRAFT_3144 at 445.091 kb on + strand, within EX28DRAFT_3144 at 445.092 kb on - strand at 445.240 kb on + strand, within EX28DRAFT_3145 at 445.240 kb on + strand, within EX28DRAFT_3145 at 445.389 kb on + strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.393 kb on - strand, within EX28DRAFT_3145 at 445.450 kb on - strand, within EX28DRAFT_3145 at 445.578 kb on + strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.994 kb on + strand at 445.995 kb on - strand at 446.099 kb on + strand at 446.099 kb on + strand at 446.099 kb on + strand at 446.100 kb on - strand at 446.279 kb on + strand, within EX28DRAFT_3146 at 446.417 kb on - strand, within EX28DRAFT_3146 at 446.459 kb on + strand, within EX28DRAFT_3146 at 446.564 kb on + strand, within EX28DRAFT_3146 at 446.565 kb on - strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.660 kb on + strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.661 kb on - strand, within EX28DRAFT_3146 at 446.662 kb on + strand, within EX28DRAFT_3146 at 446.663 kb on - strand, within EX28DRAFT_3146 at 446.786 kb on + strand, within EX28DRAFT_3146 at 446.856 kb on - strand, within EX28DRAFT_3146 at 447.021 kb on + strand at 447.032 kb on + strand at 447.155 kb on + strand, within EX28DRAFT_3147 at 447.156 kb on - strand, within EX28DRAFT_3147 at 447.156 kb on - strand, within EX28DRAFT_3147 at 447.229 kb on + strand, within EX28DRAFT_3147 at 447.229 kb on + strand, within EX28DRAFT_3147 at 447.230 kb on - strand, within EX28DRAFT_3147 at 447.529 kb on + strand, within EX28DRAFT_3147 at 447.530 kb on - strand, within EX28DRAFT_3147 at 447.579 kb on + strand, within EX28DRAFT_3147 at 447.694 kb on + strand, within EX28DRAFT_3147 at 447.698 kb on + strand, within EX28DRAFT_3147 at 447.698 kb on + strand, within EX28DRAFT_3147 at 447.699 kb on - strand, within EX28DRAFT_3147 at 447.988 kb on + strand at 447.988 kb on + strand at 447.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 445,091 + EX28DRAFT_3144 0.89 -0.4 445,091 + EX28DRAFT_3144 0.89 +0.3 445,092 - +0.0 445,240 + EX28DRAFT_3145 0.14 +0.2 445,240 + EX28DRAFT_3145 0.14 +0.2 445,389 + EX28DRAFT_3145 0.31 +0.8 445,390 - EX28DRAFT_3145 0.31 -0.6 445,390 - EX28DRAFT_3145 0.31 -0.4 445,390 - EX28DRAFT_3145 0.31 +0.1 445,390 - EX28DRAFT_3145 0.31 +0.3 445,393 - EX28DRAFT_3145 0.31 -0.4 445,450 - EX28DRAFT_3145 0.37 -0.5 445,578 + EX28DRAFT_3145 0.52 +2.1 445,579 - EX28DRAFT_3145 0.52 -0.2 445,579 - EX28DRAFT_3145 0.52 -0.3 445,579 - EX28DRAFT_3145 0.52 +0.3 445,579 - EX28DRAFT_3145 0.52 -0.1 445,579 - EX28DRAFT_3145 0.52 -0.2 445,994 + -0.5 445,995 - +0.3 446,099 + -0.5 446,099 + -2.1 446,099 + +0.7 446,100 - +0.6 446,279 + EX28DRAFT_3146 0.26 -0.8 446,417 - EX28DRAFT_3146 0.40 -0.0 446,459 + EX28DRAFT_3146 0.44 +0.1 446,564 + EX28DRAFT_3146 0.55 -0.1 446,565 - EX28DRAFT_3146 0.55 +0.2 446,660 + EX28DRAFT_3146 0.64 +0.4 446,660 + EX28DRAFT_3146 0.64 -0.2 446,660 + EX28DRAFT_3146 0.64 +0.1 446,660 + EX28DRAFT_3146 0.64 -0.6 446,660 + EX28DRAFT_3146 0.64 +0.5 446,660 + EX28DRAFT_3146 0.64 -0.2 446,661 - EX28DRAFT_3146 0.64 +0.1 446,661 - EX28DRAFT_3146 0.64 +0.2 446,661 - EX28DRAFT_3146 0.64 -0.0 446,661 - EX28DRAFT_3146 0.64 +0.5 446,661 - EX28DRAFT_3146 0.64 +0.4 446,661 - EX28DRAFT_3146 0.64 -0.2 446,662 + EX28DRAFT_3146 0.64 -3.0 446,663 - EX28DRAFT_3146 0.64 +0.4 446,786 + EX28DRAFT_3146 0.77 +0.4 446,856 - EX28DRAFT_3146 0.84 +0.1 447,021 + -0.6 447,032 + -0.9 447,155 + EX28DRAFT_3147 0.14 +0.7 447,156 - EX28DRAFT_3147 0.14 +0.2 447,156 - EX28DRAFT_3147 0.14 -0.0 447,229 + EX28DRAFT_3147 0.21 +0.2 447,229 + EX28DRAFT_3147 0.21 -0.5 447,230 - EX28DRAFT_3147 0.21 +0.1 447,529 + EX28DRAFT_3147 0.52 -1.4 447,530 - EX28DRAFT_3147 0.52 -2.7 447,579 + EX28DRAFT_3147 0.57 +0.2 447,694 + EX28DRAFT_3147 0.69 +0.6 447,698 + EX28DRAFT_3147 0.69 -0.7 447,698 + EX28DRAFT_3147 0.69 -0.6 447,699 - EX28DRAFT_3147 0.69 +1.1 447,988 + +0.5 447,988 + -0.4 447,989 - +0.2
Or see this region's nucleotide sequence