Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3145

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3143 and EX28DRAFT_3144 are separated by 55 nucleotidesEX28DRAFT_3144 and EX28DRAFT_3145 overlap by 4 nucleotidesEX28DRAFT_3145 and EX28DRAFT_3146 are separated by 11 nucleotides EX28DRAFT_3143: EX28DRAFT_3143 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 443,924 to 444,772 _3143 EX28DRAFT_3144: EX28DRAFT_3144 - Uncharacterized conserved protein, at 444,828 to 445,121 _3144 EX28DRAFT_3145: EX28DRAFT_3145 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 445,118 to 446,005 _3145 EX28DRAFT_3146: EX28DRAFT_3146 - ABC-type sugar transport system, periplasmic component, at 446,017 to 447,018 _3146 Position (kb) 445 446 447Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 444.315 kb on - strand, within EX28DRAFT_3143at 444.315 kb on - strand, within EX28DRAFT_3143at 444.360 kb on + strand, within EX28DRAFT_3143at 444.385 kb on + strand, within EX28DRAFT_3143at 444.385 kb on + strand, within EX28DRAFT_3143at 444.387 kb on + strand, within EX28DRAFT_3143at 444.388 kb on - strand, within EX28DRAFT_3143at 444.630 kb on - strand, within EX28DRAFT_3143at 444.635 kb on - strand, within EX28DRAFT_3143at 444.743 kb on - strandat 444.817 kb on + strandat 444.818 kb on - strandat 444.818 kb on - strandat 444.818 kb on - strandat 444.819 kb on + strandat 444.863 kb on + strand, within EX28DRAFT_3144at 444.863 kb on + strand, within EX28DRAFT_3144at 444.863 kb on + strand, within EX28DRAFT_3144at 444.864 kb on - strand, within EX28DRAFT_3144at 444.910 kb on + strand, within EX28DRAFT_3144at 444.911 kb on - strand, within EX28DRAFT_3144at 444.955 kb on + strand, within EX28DRAFT_3144at 444.964 kb on + strand, within EX28DRAFT_3144at 444.964 kb on + strand, within EX28DRAFT_3144at 444.965 kb on - strand, within EX28DRAFT_3144at 444.969 kb on - strand, within EX28DRAFT_3144at 445.003 kb on - strand, within EX28DRAFT_3144at 445.091 kb on + strand, within EX28DRAFT_3144at 445.091 kb on + strand, within EX28DRAFT_3144at 445.092 kb on - strandat 445.240 kb on + strand, within EX28DRAFT_3145at 445.240 kb on + strand, within EX28DRAFT_3145at 445.389 kb on + strand, within EX28DRAFT_3145at 445.390 kb on - strand, within EX28DRAFT_3145at 445.390 kb on - strand, within EX28DRAFT_3145at 445.390 kb on - strand, within EX28DRAFT_3145at 445.390 kb on - strand, within EX28DRAFT_3145at 445.393 kb on - strand, within EX28DRAFT_3145at 445.450 kb on - strand, within EX28DRAFT_3145at 445.578 kb on + strand, within EX28DRAFT_3145at 445.579 kb on - strand, within EX28DRAFT_3145at 445.579 kb on - strand, within EX28DRAFT_3145at 445.579 kb on - strand, within EX28DRAFT_3145at 445.579 kb on - strand, within EX28DRAFT_3145at 445.579 kb on - strand, within EX28DRAFT_3145at 445.994 kb on + strandat 445.995 kb on - strandat 446.099 kb on + strandat 446.099 kb on + strandat 446.099 kb on + strandat 446.100 kb on - strandat 446.279 kb on + strand, within EX28DRAFT_3146at 446.417 kb on - strand, within EX28DRAFT_3146at 446.459 kb on + strand, within EX28DRAFT_3146at 446.564 kb on + strand, within EX28DRAFT_3146at 446.565 kb on - strand, within EX28DRAFT_3146at 446.660 kb on + strand, within EX28DRAFT_3146at 446.660 kb on + strand, within EX28DRAFT_3146at 446.660 kb on + strand, within EX28DRAFT_3146at 446.660 kb on + strand, within EX28DRAFT_3146at 446.660 kb on + strand, within EX28DRAFT_3146at 446.660 kb on + strand, within EX28DRAFT_3146at 446.661 kb on - strand, within EX28DRAFT_3146at 446.661 kb on - strand, within EX28DRAFT_3146at 446.661 kb on - strand, within EX28DRAFT_3146at 446.661 kb on - strand, within EX28DRAFT_3146at 446.661 kb on - strand, within EX28DRAFT_3146at 446.661 kb on - strand, within EX28DRAFT_3146at 446.662 kb on + strand, within EX28DRAFT_3146at 446.663 kb on - strand, within EX28DRAFT_3146at 446.786 kb on + strand, within EX28DRAFT_3146at 446.856 kb on - strand, within EX28DRAFT_3146

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
444,315 - EX28DRAFT_3143 0.46 +0.4
444,315 - EX28DRAFT_3143 0.46 -0.1
444,360 + EX28DRAFT_3143 0.51 +0.9
444,385 + EX28DRAFT_3143 0.54 -0.4
444,385 + EX28DRAFT_3143 0.54 +0.6
444,387 + EX28DRAFT_3143 0.55 -0.1
444,388 - EX28DRAFT_3143 0.55 +0.4
444,630 - EX28DRAFT_3143 0.83 -1.2
444,635 - EX28DRAFT_3143 0.84 -0.4
444,743 - +0.0
444,817 + -1.8
444,818 - +0.7
444,818 - -0.3
444,818 - +0.4
444,819 + -0.1
444,863 + EX28DRAFT_3144 0.12 -0.8
444,863 + EX28DRAFT_3144 0.12 +0.4
444,863 + EX28DRAFT_3144 0.12 -0.9
444,864 - EX28DRAFT_3144 0.12 +0.3
444,910 + EX28DRAFT_3144 0.28 +0.3
444,911 - EX28DRAFT_3144 0.28 -0.4
444,955 + EX28DRAFT_3144 0.43 +0.9
444,964 + EX28DRAFT_3144 0.46 +0.0
444,964 + EX28DRAFT_3144 0.46 -0.1
444,965 - EX28DRAFT_3144 0.47 +0.4
444,969 - EX28DRAFT_3144 0.48 -0.7
445,003 - EX28DRAFT_3144 0.60 -0.1
445,091 + EX28DRAFT_3144 0.89 -0.4
445,091 + EX28DRAFT_3144 0.89 +0.3
445,092 - +0.0
445,240 + EX28DRAFT_3145 0.14 +0.2
445,240 + EX28DRAFT_3145 0.14 +0.2
445,389 + EX28DRAFT_3145 0.31 +0.8
445,390 - EX28DRAFT_3145 0.31 -0.6
445,390 - EX28DRAFT_3145 0.31 -0.4
445,390 - EX28DRAFT_3145 0.31 +0.1
445,390 - EX28DRAFT_3145 0.31 +0.3
445,393 - EX28DRAFT_3145 0.31 -0.4
445,450 - EX28DRAFT_3145 0.37 -0.5
445,578 + EX28DRAFT_3145 0.52 +2.1
445,579 - EX28DRAFT_3145 0.52 -0.2
445,579 - EX28DRAFT_3145 0.52 -0.3
445,579 - EX28DRAFT_3145 0.52 +0.3
445,579 - EX28DRAFT_3145 0.52 -0.1
445,579 - EX28DRAFT_3145 0.52 -0.2
445,994 + -0.5
445,995 - +0.3
446,099 + -0.5
446,099 + -2.1
446,099 + +0.7
446,100 - +0.6
446,279 + EX28DRAFT_3146 0.26 -0.8
446,417 - EX28DRAFT_3146 0.40 -0.0
446,459 + EX28DRAFT_3146 0.44 +0.1
446,564 + EX28DRAFT_3146 0.55 -0.1
446,565 - EX28DRAFT_3146 0.55 +0.2
446,660 + EX28DRAFT_3146 0.64 +0.4
446,660 + EX28DRAFT_3146 0.64 -0.2
446,660 + EX28DRAFT_3146 0.64 +0.1
446,660 + EX28DRAFT_3146 0.64 -0.6
446,660 + EX28DRAFT_3146 0.64 +0.5
446,660 + EX28DRAFT_3146 0.64 -0.2
446,661 - EX28DRAFT_3146 0.64 +0.1
446,661 - EX28DRAFT_3146 0.64 +0.2
446,661 - EX28DRAFT_3146 0.64 -0.0
446,661 - EX28DRAFT_3146 0.64 +0.5
446,661 - EX28DRAFT_3146 0.64 +0.4
446,661 - EX28DRAFT_3146 0.64 -0.2
446,662 + EX28DRAFT_3146 0.64 -3.0
446,663 - EX28DRAFT_3146 0.64 +0.4
446,786 + EX28DRAFT_3146 0.77 +0.4
446,856 - EX28DRAFT_3146 0.84 +0.1

Or see this region's nucleotide sequence