Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3139

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3138 and EX28DRAFT_3139 are separated by 336 nucleotidesEX28DRAFT_3139 and EX28DRAFT_3140 are separated by 408 nucleotides EX28DRAFT_3138: EX28DRAFT_3138 - Methyl-accepting chemotaxis protein, at 437,310 to 438,869 _3138 EX28DRAFT_3139: EX28DRAFT_3139 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 439,206 to 440,726 _3139 EX28DRAFT_3140: EX28DRAFT_3140 - diamine aminotransferase apoenzyme (EC 2.6.1.29), at 441,135 to 442,541 _3140 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1at 438.275 kb on + strand, within EX28DRAFT_3138at 438.309 kb on - strand, within EX28DRAFT_3138at 438.392 kb on + strand, within EX28DRAFT_3138at 438.497 kb on - strand, within EX28DRAFT_3138at 438.631 kb on + strand, within EX28DRAFT_3138at 438.632 kb on - strand, within EX28DRAFT_3138at 438.632 kb on - strand, within EX28DRAFT_3138at 438.632 kb on - strand, within EX28DRAFT_3138at 438.735 kb on - strandat 438.861 kb on + strandat 438.979 kb on - strandat 439.079 kb on + strandat 439.200 kb on - strandat 439.424 kb on + strand, within EX28DRAFT_3139at 439.424 kb on + strand, within EX28DRAFT_3139at 439.473 kb on + strand, within EX28DRAFT_3139at 439.473 kb on + strand, within EX28DRAFT_3139at 439.473 kb on + strand, within EX28DRAFT_3139at 439.474 kb on - strand, within EX28DRAFT_3139at 439.503 kb on - strand, within EX28DRAFT_3139at 439.628 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.395 kb on + strand, within EX28DRAFT_3139at 440.395 kb on + strand, within EX28DRAFT_3139at 440.396 kb on - strand, within EX28DRAFT_3139at 440.396 kb on - strand, within EX28DRAFT_3139at 440.564 kb on + strand, within EX28DRAFT_3139at 440.565 kb on - strand, within EX28DRAFT_3139at 440.565 kb on - strand, within EX28DRAFT_3139at 440.641 kb on + strandat 440.641 kb on + strandat 440.661 kb on - strandat 440.661 kb on - strandat 440.667 kb on + strandat 440.668 kb on - strandat 440.668 kb on - strandat 440.693 kb on - strandat 440.710 kb on + strandat 440.710 kb on + strandat 440.710 kb on + strandat 440.710 kb on + strandat 440.711 kb on - strandat 440.747 kb on + strandat 440.759 kb on - strandat 440.797 kb on + strandat 440.798 kb on - strandat 440.804 kb on - strandat 440.906 kb on + strandat 440.986 kb on - strandat 440.986 kb on - strandat 441.008 kb on - strandat 441.037 kb on + strandat 441.117 kb on + strandat 441.117 kb on + strandat 441.117 kb on + strandat 441.122 kb on - strandat 441.172 kb on + strandat 441.172 kb on + strandat 441.282 kb on + strand, within EX28DRAFT_3140at 441.287 kb on + strand, within EX28DRAFT_3140at 441.380 kb on + strand, within EX28DRAFT_3140at 441.589 kb on - strand, within EX28DRAFT_3140at 441.589 kb on - strand, within EX28DRAFT_3140at 441.600 kb on - strand, within EX28DRAFT_3140at 441.600 kb on - strand, within EX28DRAFT_3140at 441.708 kb on - strand, within EX28DRAFT_3140

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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438,275 + EX28DRAFT_3138 0.62 +0.4
438,309 - EX28DRAFT_3138 0.64 -0.6
438,392 + EX28DRAFT_3138 0.69 -0.3
438,497 - EX28DRAFT_3138 0.76 -0.3
438,631 + EX28DRAFT_3138 0.85 -0.5
438,632 - EX28DRAFT_3138 0.85 +0.2
438,632 - EX28DRAFT_3138 0.85 -0.7
438,632 - EX28DRAFT_3138 0.85 +0.3
438,735 - +0.5
438,861 + +0.1
438,979 - +1.0
439,079 + +0.4
439,200 - +0.3
439,424 + EX28DRAFT_3139 0.14 -0.4
439,424 + EX28DRAFT_3139 0.14 +0.2
439,473 + EX28DRAFT_3139 0.18 +0.7
439,473 + EX28DRAFT_3139 0.18 +0.1
439,473 + EX28DRAFT_3139 0.18 +0.4
439,474 - EX28DRAFT_3139 0.18 +0.3
439,503 - EX28DRAFT_3139 0.20 +0.6
439,628 + EX28DRAFT_3139 0.28 +0.1
440,393 + EX28DRAFT_3139 0.78 -0.6
440,393 + EX28DRAFT_3139 0.78 +0.2
440,393 + EX28DRAFT_3139 0.78 -0.0
440,393 + EX28DRAFT_3139 0.78 +0.2
440,393 + EX28DRAFT_3139 0.78 -0.4
440,394 - EX28DRAFT_3139 0.78 -3.1
440,394 - EX28DRAFT_3139 0.78 -1.3
440,394 - EX28DRAFT_3139 0.78 -0.7
440,394 - EX28DRAFT_3139 0.78 +1.4
440,394 - EX28DRAFT_3139 0.78 -1.3
440,394 - EX28DRAFT_3139 0.78 +0.5
440,395 + EX28DRAFT_3139 0.78 +0.8
440,395 + EX28DRAFT_3139 0.78 +0.3
440,396 - EX28DRAFT_3139 0.78 -0.5
440,396 - EX28DRAFT_3139 0.78 -0.1
440,564 + EX28DRAFT_3139 0.89 +0.4
440,565 - EX28DRAFT_3139 0.89 +0.2
440,565 - EX28DRAFT_3139 0.89 -0.1
440,641 + -0.8
440,641 + -0.1
440,661 - -0.8
440,661 - +0.3
440,667 + +0.6
440,668 - +0.8
440,668 - +0.9
440,693 - +0.6
440,710 + +0.3
440,710 + +0.4
440,710 + -0.3
440,710 + -0.0
440,711 - +0.0
440,747 + -0.2
440,759 - +0.0
440,797 + -0.6
440,798 - +0.0
440,804 - +1.2
440,906 + -0.3
440,986 - +0.0
440,986 - +0.3
441,008 - +0.7
441,037 + -0.1
441,117 + -0.0
441,117 + +0.2
441,117 + +0.1
441,122 - +0.1
441,172 + +0.3
441,172 + +0.4
441,282 + EX28DRAFT_3140 0.10 +1.6
441,287 + EX28DRAFT_3140 0.11 +0.0
441,380 + EX28DRAFT_3140 0.17 +0.6
441,589 - EX28DRAFT_3140 0.32 +0.2
441,589 - EX28DRAFT_3140 0.32 +0.5
441,600 - EX28DRAFT_3140 0.33 +0.6
441,600 - EX28DRAFT_3140 0.33 -0.0
441,708 - EX28DRAFT_3140 0.41 -0.3

Or see this region's nucleotide sequence