Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2933

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2931 and EX28DRAFT_2932 are separated by 3 nucleotidesEX28DRAFT_2932 and EX28DRAFT_2933 are separated by 168 nucleotidesEX28DRAFT_2933 and EX28DRAFT_2934 are separated by 80 nucleotides EX28DRAFT_2931: EX28DRAFT_2931 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 240,454 to 242,091 _2931 EX28DRAFT_2932: EX28DRAFT_2932 - Response regulator of citrate/malate metabolism, at 242,095 to 242,796 _2932 EX28DRAFT_2933: EX28DRAFT_2933 - ABC-type Fe3+ transport system, periplasmic component, at 242,965 to 244,053 _2933 EX28DRAFT_2934: EX28DRAFT_2934 - ABC-type Fe3+ transport system, permease component, at 244,134 to 245,903 _2934 Position (kb) 242 243 244 245Strain fitness (log2 ratio) -2 -1 0 1at 241.988 kb on - strandat 241.988 kb on - strandat 242.058 kb on + strandat 242.059 kb on - strandat 242.069 kb on + strandat 242.069 kb on + strandat 242.089 kb on + strandat 242.126 kb on + strandat 242.168 kb on - strand, within EX28DRAFT_2932at 242.170 kb on - strand, within EX28DRAFT_2932at 242.275 kb on + strand, within EX28DRAFT_2932at 242.276 kb on - strand, within EX28DRAFT_2932at 242.330 kb on - strand, within EX28DRAFT_2932at 242.411 kb on - strand, within EX28DRAFT_2932at 242.411 kb on - strand, within EX28DRAFT_2932at 242.419 kb on - strand, within EX28DRAFT_2932at 242.693 kb on - strand, within EX28DRAFT_2932at 242.701 kb on + strand, within EX28DRAFT_2932at 242.740 kb on + strandat 242.740 kb on + strandat 242.768 kb on + strandat 242.769 kb on - strandat 242.809 kb on + strandat 242.810 kb on - strandat 242.840 kb on + strandat 242.841 kb on - strandat 242.841 kb on - strandat 242.920 kb on - strandat 242.920 kb on - strandat 242.961 kb on + strandat 242.962 kb on - strandat 243.005 kb on + strandat 243.106 kb on + strand, within EX28DRAFT_2933at 243.211 kb on + strand, within EX28DRAFT_2933at 243.307 kb on + strand, within EX28DRAFT_2933at 243.322 kb on - strand, within EX28DRAFT_2933at 243.369 kb on + strand, within EX28DRAFT_2933at 243.389 kb on - strand, within EX28DRAFT_2933at 243.406 kb on - strand, within EX28DRAFT_2933at 243.409 kb on + strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.576 kb on + strand, within EX28DRAFT_2933at 243.576 kb on + strand, within EX28DRAFT_2933at 243.581 kb on - strand, within EX28DRAFT_2933at 243.586 kb on - strand, within EX28DRAFT_2933at 243.618 kb on - strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933at 243.835 kb on + strand, within EX28DRAFT_2933at 243.836 kb on - strand, within EX28DRAFT_2933at 243.883 kb on - strand, within EX28DRAFT_2933at 243.883 kb on - strand, within EX28DRAFT_2933at 244.018 kb on + strandat 244.019 kb on - strandat 244.052 kb on - strandat 244.129 kb on - strandat 244.139 kb on + strandat 244.139 kb on + strandat 244.139 kb on + strandat 244.139 kb on + strandat 244.139 kb on + strandat 244.140 kb on - strandat 244.145 kb on - strandat 244.206 kb on + strandat 244.206 kb on + strandat 244.344 kb on - strand, within EX28DRAFT_2934at 244.568 kb on + strand, within EX28DRAFT_2934at 244.569 kb on - strand, within EX28DRAFT_2934at 244.572 kb on + strand, within EX28DRAFT_2934at 244.572 kb on + strand, within EX28DRAFT_2934at 244.573 kb on - strand, within EX28DRAFT_2934at 244.626 kb on + strand, within EX28DRAFT_2934at 244.626 kb on + strand, within EX28DRAFT_2934at 244.632 kb on + strand, within EX28DRAFT_2934at 244.632 kb on + strand, within EX28DRAFT_2934at 244.632 kb on + strand, within EX28DRAFT_2934at 244.632 kb on + strand, within EX28DRAFT_2934at 244.634 kb on + strand, within EX28DRAFT_2934at 244.635 kb on - strand, within EX28DRAFT_2934at 244.810 kb on + strand, within EX28DRAFT_2934at 244.849 kb on - strand, within EX28DRAFT_2934at 244.849 kb on - strand, within EX28DRAFT_2934at 244.854 kb on + strand, within EX28DRAFT_2934at 244.854 kb on + strand, within EX28DRAFT_2934at 244.855 kb on - strand, within EX28DRAFT_2934at 244.887 kb on + strand, within EX28DRAFT_2934

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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241,988 - -0.9
241,988 - +0.8
242,058 + -0.2
242,059 - -0.0
242,069 + -0.2
242,069 + +0.2
242,089 + +0.3
242,126 + +1.6
242,168 - EX28DRAFT_2932 0.10 +0.6
242,170 - EX28DRAFT_2932 0.11 -0.4
242,275 + EX28DRAFT_2932 0.26 +0.1
242,276 - EX28DRAFT_2932 0.26 -0.0
242,330 - EX28DRAFT_2932 0.33 +0.2
242,411 - EX28DRAFT_2932 0.45 -0.0
242,411 - EX28DRAFT_2932 0.45 +0.2
242,419 - EX28DRAFT_2932 0.46 +0.2
242,693 - EX28DRAFT_2932 0.85 +0.3
242,701 + EX28DRAFT_2932 0.86 +1.0
242,740 + +0.0
242,740 + -0.5
242,768 + -0.5
242,769 - -0.6
242,809 + -0.7
242,810 - +0.1
242,840 + +0.1
242,841 - +0.4
242,841 - -0.3
242,920 - -0.4
242,920 - -0.0
242,961 + +0.9
242,962 - +0.4
243,005 + -0.4
243,106 + EX28DRAFT_2933 0.13 -1.0
243,211 + EX28DRAFT_2933 0.23 -0.3
243,307 + EX28DRAFT_2933 0.31 -0.4
243,322 - EX28DRAFT_2933 0.33 -0.4
243,369 + EX28DRAFT_2933 0.37 -0.5
243,389 - EX28DRAFT_2933 0.39 +0.2
243,406 - EX28DRAFT_2933 0.40 -2.2
243,409 + EX28DRAFT_2933 0.41 -0.4
243,544 - EX28DRAFT_2933 0.53 +0.8
243,544 - EX28DRAFT_2933 0.53 +0.2
243,544 - EX28DRAFT_2933 0.53 +0.2
243,576 + EX28DRAFT_2933 0.56 +1.4
243,576 + EX28DRAFT_2933 0.56 -0.6
243,581 - EX28DRAFT_2933 0.57 -0.1
243,586 - EX28DRAFT_2933 0.57 -0.3
243,618 - EX28DRAFT_2933 0.60 -0.1
243,757 + EX28DRAFT_2933 0.73 -1.1
243,757 + EX28DRAFT_2933 0.73 +0.0
243,757 + EX28DRAFT_2933 0.73 +0.4
243,835 + EX28DRAFT_2933 0.80 -0.2
243,836 - EX28DRAFT_2933 0.80 -0.9
243,883 - EX28DRAFT_2933 0.84 -0.2
243,883 - EX28DRAFT_2933 0.84 +0.3
244,018 + -0.1
244,019 - +0.1
244,052 - +0.2
244,129 - +0.3
244,139 + -0.5
244,139 + +0.2
244,139 + -0.1
244,139 + +1.0
244,139 + +0.8
244,140 - +0.5
244,145 - -1.1
244,206 + +0.8
244,206 + -0.1
244,344 - EX28DRAFT_2934 0.12 -0.1
244,568 + EX28DRAFT_2934 0.25 +0.5
244,569 - EX28DRAFT_2934 0.25 -0.7
244,572 + EX28DRAFT_2934 0.25 -0.2
244,572 + EX28DRAFT_2934 0.25 +1.3
244,573 - EX28DRAFT_2934 0.25 -0.5
244,626 + EX28DRAFT_2934 0.28 +0.3
244,626 + EX28DRAFT_2934 0.28 +0.5
244,632 + EX28DRAFT_2934 0.28 +0.3
244,632 + EX28DRAFT_2934 0.28 +0.6
244,632 + EX28DRAFT_2934 0.28 -0.4
244,632 + EX28DRAFT_2934 0.28 +0.1
244,634 + EX28DRAFT_2934 0.28 -0.1
244,635 - EX28DRAFT_2934 0.28 -0.5
244,810 + EX28DRAFT_2934 0.38 -0.9
244,849 - EX28DRAFT_2934 0.40 +0.2
244,849 - EX28DRAFT_2934 0.40 -0.4
244,854 + EX28DRAFT_2934 0.41 -0.1
244,854 + EX28DRAFT_2934 0.41 -0.2
244,855 - EX28DRAFT_2934 0.41 -0.6
244,887 + EX28DRAFT_2934 0.43 -0.1

Or see this region's nucleotide sequence