Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2924

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2923 and EX28DRAFT_2924 are separated by 93 nucleotidesEX28DRAFT_2924 and EX28DRAFT_2925 are separated by 90 nucleotidesEX28DRAFT_2925 and EX28DRAFT_2926 are separated by 119 nucleotides EX28DRAFT_2923: EX28DRAFT_2923 - acetyl-CoA acetyltransferases, at 234,447 to 235,625 _2923 EX28DRAFT_2924: EX28DRAFT_2924 - Transcriptional regulator, at 235,719 to 236,585 _2924 EX28DRAFT_2925: EX28DRAFT_2925 - Predicted membrane protein, at 236,676 to 237,152 _2925 EX28DRAFT_2926: EX28DRAFT_2926 - Amino acid permeases, at 237,272 to 238,501 _2926 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1at 234.743 kb on - strand, within EX28DRAFT_2923at 234.780 kb on + strand, within EX28DRAFT_2923at 235.158 kb on - strand, within EX28DRAFT_2923at 235.162 kb on + strand, within EX28DRAFT_2923at 235.162 kb on + strand, within EX28DRAFT_2923at 235.163 kb on - strand, within EX28DRAFT_2923at 235.163 kb on - strand, within EX28DRAFT_2923at 235.163 kb on - strand, within EX28DRAFT_2923at 235.274 kb on + strand, within EX28DRAFT_2923at 235.275 kb on - strand, within EX28DRAFT_2923at 235.587 kb on - strandat 235.609 kb on - strandat 235.609 kb on - strandat 235.612 kb on - strandat 235.612 kb on - strandat 235.684 kb on + strandat 235.738 kb on + strandat 235.739 kb on - strandat 235.739 kb on - strandat 235.984 kb on + strand, within EX28DRAFT_2924at 235.984 kb on + strand, within EX28DRAFT_2924at 235.985 kb on - strand, within EX28DRAFT_2924at 236.071 kb on + strand, within EX28DRAFT_2924at 236.072 kb on - strand, within EX28DRAFT_2924at 236.072 kb on - strand, within EX28DRAFT_2924at 236.103 kb on + strand, within EX28DRAFT_2924at 236.578 kb on + strandat 236.591 kb on - strandat 236.595 kb on - strandat 236.674 kb on + strandat 236.675 kb on - strandat 236.684 kb on + strandat 236.684 kb on + strandat 236.685 kb on - strandat 236.685 kb on - strandat 236.690 kb on + strandat 236.690 kb on + strandat 236.837 kb on + strand, within EX28DRAFT_2925at 236.838 kb on - strand, within EX28DRAFT_2925at 236.870 kb on + strand, within EX28DRAFT_2925at 236.870 kb on + strand, within EX28DRAFT_2925at 236.871 kb on - strand, within EX28DRAFT_2925at 236.871 kb on - strand, within EX28DRAFT_2925at 236.871 kb on - strand, within EX28DRAFT_2925at 236.874 kb on + strand, within EX28DRAFT_2925at 236.874 kb on + strand, within EX28DRAFT_2925at 236.874 kb on + strand, within EX28DRAFT_2925at 236.877 kb on - strand, within EX28DRAFT_2925at 236.969 kb on + strand, within EX28DRAFT_2925at 237.066 kb on + strand, within EX28DRAFT_2925at 237.067 kb on - strand, within EX28DRAFT_2925at 237.067 kb on - strand, within EX28DRAFT_2925at 237.067 kb on - strand, within EX28DRAFT_2925at 237.078 kb on + strand, within EX28DRAFT_2925at 237.078 kb on + strand, within EX28DRAFT_2925at 237.079 kb on - strand, within EX28DRAFT_2925at 237.079 kb on - strand, within EX28DRAFT_2925at 237.079 kb on - strand, within EX28DRAFT_2925at 237.079 kb on - strand, within EX28DRAFT_2925at 237.216 kb on + strandat 237.216 kb on + strandat 237.217 kb on - strandat 237.217 kb on - strandat 237.220 kb on + strandat 237.220 kb on + strandat 237.221 kb on - strandat 237.221 kb on - strandat 237.221 kb on - strandat 237.271 kb on - strandat 237.414 kb on - strand, within EX28DRAFT_2926at 237.425 kb on + strand, within EX28DRAFT_2926at 237.425 kb on + strand, within EX28DRAFT_2926at 237.426 kb on - strand, within EX28DRAFT_2926at 237.510 kb on - strand, within EX28DRAFT_2926at 237.513 kb on - strand, within EX28DRAFT_2926at 237.548 kb on + strand, within EX28DRAFT_2926at 237.581 kb on + strand, within EX28DRAFT_2926

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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234,743 - EX28DRAFT_2923 0.25 +0.6
234,780 + EX28DRAFT_2923 0.28 -0.4
235,158 - EX28DRAFT_2923 0.60 +0.0
235,162 + EX28DRAFT_2923 0.61 -0.3
235,162 + EX28DRAFT_2923 0.61 +0.2
235,163 - EX28DRAFT_2923 0.61 -1.0
235,163 - EX28DRAFT_2923 0.61 -0.0
235,163 - EX28DRAFT_2923 0.61 +0.4
235,274 + EX28DRAFT_2923 0.70 -0.4
235,275 - EX28DRAFT_2923 0.70 +0.2
235,587 - -0.6
235,609 - +0.3
235,609 - +0.5
235,612 - -0.8
235,612 - +0.3
235,684 + -0.6
235,738 + -0.3
235,739 - -1.7
235,739 - -0.6
235,984 + EX28DRAFT_2924 0.31 -0.6
235,984 + EX28DRAFT_2924 0.31 +1.7
235,985 - EX28DRAFT_2924 0.31 -1.7
236,071 + EX28DRAFT_2924 0.41 -0.4
236,072 - EX28DRAFT_2924 0.41 +0.9
236,072 - EX28DRAFT_2924 0.41 +0.2
236,103 + EX28DRAFT_2924 0.44 +0.0
236,578 + +0.0
236,591 - +0.0
236,595 - +0.3
236,674 + +0.5
236,675 - +0.1
236,684 + +0.2
236,684 + -0.2
236,685 - -0.0
236,685 - -0.8
236,690 + -0.3
236,690 + +0.3
236,837 + EX28DRAFT_2925 0.34 +0.7
236,838 - EX28DRAFT_2925 0.34 -0.2
236,870 + EX28DRAFT_2925 0.41 +0.2
236,870 + EX28DRAFT_2925 0.41 -2.9
236,871 - EX28DRAFT_2925 0.41 +0.5
236,871 - EX28DRAFT_2925 0.41 -0.2
236,871 - EX28DRAFT_2925 0.41 +0.6
236,874 + EX28DRAFT_2925 0.42 -0.1
236,874 + EX28DRAFT_2925 0.42 +0.2
236,874 + EX28DRAFT_2925 0.42 -0.4
236,877 - EX28DRAFT_2925 0.42 -0.9
236,969 + EX28DRAFT_2925 0.61 -2.0
237,066 + EX28DRAFT_2925 0.82 -1.6
237,067 - EX28DRAFT_2925 0.82 +0.6
237,067 - EX28DRAFT_2925 0.82 -0.4
237,067 - EX28DRAFT_2925 0.82 -0.5
237,078 + EX28DRAFT_2925 0.84 -0.4
237,078 + EX28DRAFT_2925 0.84 -0.1
237,079 - EX28DRAFT_2925 0.84 -0.3
237,079 - EX28DRAFT_2925 0.84 -0.0
237,079 - EX28DRAFT_2925 0.84 -0.5
237,079 - EX28DRAFT_2925 0.84 +0.1
237,216 + -0.0
237,216 + +0.7
237,217 - -0.5
237,217 - +0.4
237,220 + +0.2
237,220 + +0.6
237,221 - +0.2
237,221 - -1.5
237,221 - -1.1
237,271 - -0.3
237,414 - EX28DRAFT_2926 0.12 +0.4
237,425 + EX28DRAFT_2926 0.12 +1.3
237,425 + EX28DRAFT_2926 0.12 +0.3
237,426 - EX28DRAFT_2926 0.13 +0.2
237,510 - EX28DRAFT_2926 0.19 -0.5
237,513 - EX28DRAFT_2926 0.20 -0.4
237,548 + EX28DRAFT_2926 0.22 -0.2
237,581 + EX28DRAFT_2926 0.25 +0.2

Or see this region's nucleotide sequence