Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2881 and EX28DRAFT_2882 overlap by 8 nucleotides EX28DRAFT_2882 and EX28DRAFT_2883 are separated by 39 nucleotides EX28DRAFT_2883 and EX28DRAFT_2884 are separated by 128 nucleotides EX28DRAFT_2884 and EX28DRAFT_2885 are separated by 13 nucleotides EX28DRAFT_2885 and EX28DRAFT_2886 are separated by 192 nucleotides
EX28DRAFT_2881: EX28DRAFT_2881 - Predicted SAM-dependent methyltransferase, at 188,258 to 189,358
_2881
EX28DRAFT_2882: EX28DRAFT_2882 - Uncharacterized small membrane protein, at 189,351 to 189,746
_2882
EX28DRAFT_2883: EX28DRAFT_2883 - Transcriptional regulator, at 189,786 to 190,703
_2883
EX28DRAFT_2884: EX28DRAFT_2884 - RNA, at 190,832 to 191,039
_2884
EX28DRAFT_2885: EX28DRAFT_2885 - Bacterial protein of unknown function (DUF903), at 191,053 to 191,280
_2885
EX28DRAFT_2886: EX28DRAFT_2886 - cysteine desulfurase, catalytic subunit CsdA, at 191,473 to 192,678
_2886
Position (kb) 189
190
191 Strain fitness (log2 ratio) -1
0
1 at 188.843 kb on - strand, within EX28DRAFT_2881 at 188.868 kb on + strand, within EX28DRAFT_2881 at 188.875 kb on - strand, within EX28DRAFT_2881 at 188.881 kb on + strand, within EX28DRAFT_2881 at 188.882 kb on - strand, within EX28DRAFT_2881 at 188.883 kb on + strand, within EX28DRAFT_2881 at 188.884 kb on - strand, within EX28DRAFT_2881 at 188.911 kb on + strand, within EX28DRAFT_2881 at 188.940 kb on + strand, within EX28DRAFT_2881 at 189.020 kb on - strand, within EX28DRAFT_2881 at 189.237 kb on + strand, within EX28DRAFT_2881 at 189.341 kb on + strand at 189.341 kb on + strand at 189.341 kb on + strand at 189.342 kb on - strand at 189.403 kb on - strand, within EX28DRAFT_2882 at 189.405 kb on + strand, within EX28DRAFT_2882 at 189.444 kb on - strand, within EX28DRAFT_2882 at 189.484 kb on + strand, within EX28DRAFT_2882 at 189.509 kb on + strand, within EX28DRAFT_2882 at 189.548 kb on + strand, within EX28DRAFT_2882 at 189.611 kb on - strand, within EX28DRAFT_2882 at 189.663 kb on + strand, within EX28DRAFT_2882 at 189.666 kb on + strand, within EX28DRAFT_2882 at 189.666 kb on + strand, within EX28DRAFT_2882 at 189.666 kb on + strand, within EX28DRAFT_2882 at 189.666 kb on + strand, within EX28DRAFT_2882 at 189.667 kb on - strand, within EX28DRAFT_2882 at 189.667 kb on - strand, within EX28DRAFT_2882 at 189.667 kb on - strand, within EX28DRAFT_2882 at 189.667 kb on - strand, within EX28DRAFT_2882 at 189.701 kb on + strand, within EX28DRAFT_2882 at 189.751 kb on - strand at 189.751 kb on - strand at 189.788 kb on - strand at 189.797 kb on - strand at 189.867 kb on - strand at 189.901 kb on + strand, within EX28DRAFT_2883 at 189.902 kb on - strand, within EX28DRAFT_2883 at 189.924 kb on + strand, within EX28DRAFT_2883 at 189.925 kb on - strand, within EX28DRAFT_2883 at 189.925 kb on - strand, within EX28DRAFT_2883 at 189.933 kb on - strand, within EX28DRAFT_2883 at 190.070 kb on + strand, within EX28DRAFT_2883 at 190.070 kb on + strand, within EX28DRAFT_2883 at 190.083 kb on + strand, within EX28DRAFT_2883 at 190.084 kb on - strand, within EX28DRAFT_2883 at 190.182 kb on + strand, within EX28DRAFT_2883 at 190.222 kb on + strand, within EX28DRAFT_2883 at 190.635 kb on - strand at 190.806 kb on + strand at 190.806 kb on + strand at 190.816 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.821 kb on - strand at 190.822 kb on + strand at 190.983 kb on + strand, within EX28DRAFT_2884 at 190.983 kb on + strand, within EX28DRAFT_2884 at 190.984 kb on - strand, within EX28DRAFT_2884 at 191.005 kb on + strand, within EX28DRAFT_2884 at 191.010 kb on + strand, within EX28DRAFT_2884 at 191.011 kb on - strand, within EX28DRAFT_2884 at 191.179 kb on - strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.208 kb on - strand, within EX28DRAFT_2885 at 191.208 kb on - strand, within EX28DRAFT_2885 at 191.275 kb on - strand at 191.285 kb on - strand at 191.357 kb on - strand at 191.382 kb on + strand at 191.409 kb on + strand at 191.409 kb on + strand at 191.410 kb on - strand at 191.452 kb on + strand at 191.453 kb on - strand at 191.453 kb on - strand at 191.454 kb on + strand at 191.537 kb on - strand at 191.537 kb on - strand at 191.600 kb on - strand, within EX28DRAFT_2886
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 188,843 - EX28DRAFT_2881 0.53 +1.0 188,868 + EX28DRAFT_2881 0.55 -0.4 188,875 - EX28DRAFT_2881 0.56 +1.0 188,881 + EX28DRAFT_2881 0.57 +1.6 188,882 - EX28DRAFT_2881 0.57 +0.7 188,883 + EX28DRAFT_2881 0.57 +0.6 188,884 - EX28DRAFT_2881 0.57 +0.2 188,911 + EX28DRAFT_2881 0.59 -0.1 188,940 + EX28DRAFT_2881 0.62 +0.1 189,020 - EX28DRAFT_2881 0.69 +1.0 189,237 + EX28DRAFT_2881 0.89 +0.2 189,341 + +0.4 189,341 + -0.5 189,341 + +1.0 189,342 - +0.6 189,403 - EX28DRAFT_2882 0.13 +0.1 189,405 + EX28DRAFT_2882 0.14 +0.0 189,444 - EX28DRAFT_2882 0.23 -0.5 189,484 + EX28DRAFT_2882 0.34 +0.4 189,509 + EX28DRAFT_2882 0.40 +0.3 189,548 + EX28DRAFT_2882 0.50 +0.5 189,611 - EX28DRAFT_2882 0.66 +0.3 189,663 + EX28DRAFT_2882 0.79 -0.3 189,666 + EX28DRAFT_2882 0.80 +0.4 189,666 + EX28DRAFT_2882 0.80 -0.4 189,666 + EX28DRAFT_2882 0.80 -0.7 189,666 + EX28DRAFT_2882 0.80 -1.0 189,667 - EX28DRAFT_2882 0.80 -1.2 189,667 - EX28DRAFT_2882 0.80 +0.6 189,667 - EX28DRAFT_2882 0.80 +0.5 189,667 - EX28DRAFT_2882 0.80 -0.0 189,701 + EX28DRAFT_2882 0.88 +1.2 189,751 - -1.1 189,751 - +0.5 189,788 - +1.1 189,797 - -0.1 189,867 - -0.1 189,901 + EX28DRAFT_2883 0.13 +0.6 189,902 - EX28DRAFT_2883 0.13 +0.4 189,924 + EX28DRAFT_2883 0.15 +1.2 189,925 - EX28DRAFT_2883 0.15 +0.2 189,925 - EX28DRAFT_2883 0.15 +0.0 189,933 - EX28DRAFT_2883 0.16 +0.1 190,070 + EX28DRAFT_2883 0.31 -1.1 190,070 + EX28DRAFT_2883 0.31 +1.5 190,083 + EX28DRAFT_2883 0.32 +0.4 190,084 - EX28DRAFT_2883 0.32 +0.1 190,182 + EX28DRAFT_2883 0.43 +0.5 190,222 + EX28DRAFT_2883 0.47 -0.0 190,635 - +0.4 190,806 + +0.3 190,806 + +1.3 190,816 + +0.2 190,820 + -1.3 190,820 + -0.1 190,820 + -0.2 190,820 + -0.2 190,820 + +0.2 190,821 - -0.6 190,822 + +0.7 190,983 + EX28DRAFT_2884 0.73 +0.2 190,983 + EX28DRAFT_2884 0.73 -0.4 190,984 - EX28DRAFT_2884 0.73 +0.1 191,005 + EX28DRAFT_2884 0.83 +0.7 191,010 + EX28DRAFT_2884 0.86 -1.1 191,011 - EX28DRAFT_2884 0.86 -0.0 191,179 - EX28DRAFT_2885 0.55 -0.5 191,207 + EX28DRAFT_2885 0.68 +0.9 191,207 + EX28DRAFT_2885 0.68 -0.8 191,207 + EX28DRAFT_2885 0.68 +0.2 191,208 - EX28DRAFT_2885 0.68 +0.2 191,208 - EX28DRAFT_2885 0.68 +0.0 191,275 - +0.8 191,285 - -0.5 191,357 - -0.4 191,382 + -0.2 191,409 + -0.1 191,409 + +0.3 191,410 - -0.3 191,452 + -0.2 191,453 - +0.8 191,453 - +0.4 191,454 + -0.2 191,537 - -0.0 191,537 - +0.7 191,600 - EX28DRAFT_2886 0.11 +0.9
Or see this region's nucleotide sequence