Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2829

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2826 and EX28DRAFT_2827 are separated by 5 nucleotidesEX28DRAFT_2827 and EX28DRAFT_2828 are separated by 175 nucleotidesEX28DRAFT_2828 and EX28DRAFT_2829 are separated by 113 nucleotidesEX28DRAFT_2829 and EX28DRAFT_2830 are separated by 139 nucleotidesEX28DRAFT_2830 and EX28DRAFT_2831 are separated by 10 nucleotides EX28DRAFT_2826: EX28DRAFT_2826 - Major Facilitator Superfamily, at 129,524 to 130,744 _2826 EX28DRAFT_2827: EX28DRAFT_2827 - Nitrous oxide-stimulated promoter, at 130,750 to 131,094 _2827 EX28DRAFT_2828: EX28DRAFT_2828 - Toxin SymE, type I toxin-antitoxin system, at 131,270 to 131,500 _2828 EX28DRAFT_2829: EX28DRAFT_2829 - DNA mismatch repair protein MutS, at 131,614 to 134,175 _2829 EX28DRAFT_2830: EX28DRAFT_2830 - hypothetical protein, at 134,315 to 134,536 _2830 EX28DRAFT_2831: EX28DRAFT_2831 - UbiD family decarboxylase, at 134,547 to 135,974 _2831 Position (kb) 131 132 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 130.665 kb on - strandat 130.766 kb on + strandat 130.766 kb on + strandat 130.845 kb on + strand, within EX28DRAFT_2827at 130.846 kb on - strand, within EX28DRAFT_2827at 130.957 kb on - strand, within EX28DRAFT_2827at 130.957 kb on - strand, within EX28DRAFT_2827at 131.036 kb on + strand, within EX28DRAFT_2827at 131.037 kb on - strand, within EX28DRAFT_2827at 131.223 kb on + strandat 131.269 kb on + strandat 131.298 kb on - strand, within EX28DRAFT_2828at 131.319 kb on - strand, within EX28DRAFT_2828at 131.392 kb on - strand, within EX28DRAFT_2828at 131.423 kb on - strand, within EX28DRAFT_2828at 131.478 kb on + strandat 131.546 kb on - strandat 131.546 kb on - strandat 131.607 kb on + strandat 131.607 kb on + strandat 131.608 kb on - strandat 131.663 kb on - strandat 131.729 kb on + strandat 131.729 kb on + strandat 131.730 kb on - strandat 131.730 kb on - strandat 131.730 kb on - strandat 131.745 kb on + strandat 131.823 kb on + strandat 131.824 kb on - strandat 132.063 kb on + strand, within EX28DRAFT_2829at 132.063 kb on + strand, within EX28DRAFT_2829at 132.063 kb on + strand, within EX28DRAFT_2829at 132.064 kb on - strand, within EX28DRAFT_2829at 132.064 kb on - strand, within EX28DRAFT_2829at 132.064 kb on - strand, within EX28DRAFT_2829at 132.384 kb on + strand, within EX28DRAFT_2829at 132.439 kb on - strand, within EX28DRAFT_2829at 132.474 kb on - strand, within EX28DRAFT_2829at 132.480 kb on + strand, within EX28DRAFT_2829at 132.481 kb on - strand, within EX28DRAFT_2829at 132.504 kb on + strand, within EX28DRAFT_2829at 132.550 kb on - strand, within EX28DRAFT_2829at 132.814 kb on - strand, within EX28DRAFT_2829at 132.898 kb on + strand, within EX28DRAFT_2829at 132.898 kb on + strand, within EX28DRAFT_2829at 133.033 kb on + strand, within EX28DRAFT_2829at 133.034 kb on - strand, within EX28DRAFT_2829at 133.114 kb on + strand, within EX28DRAFT_2829at 133.138 kb on + strand, within EX28DRAFT_2829at 133.195 kb on + strand, within EX28DRAFT_2829at 133.196 kb on - strand, within EX28DRAFT_2829at 133.196 kb on - strand, within EX28DRAFT_2829at 133.312 kb on + strand, within EX28DRAFT_2829at 133.312 kb on + strand, within EX28DRAFT_2829at 133.312 kb on + strand, within EX28DRAFT_2829at 133.313 kb on - strand, within EX28DRAFT_2829at 133.313 kb on - strand, within EX28DRAFT_2829at 133.314 kb on + strand, within EX28DRAFT_2829at 133.315 kb on - strand, within EX28DRAFT_2829at 133.376 kb on + strand, within EX28DRAFT_2829at 133.476 kb on + strand, within EX28DRAFT_2829at 133.477 kb on - strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.481 kb on - strand, within EX28DRAFT_2829at 133.481 kb on - strand, within EX28DRAFT_2829at 133.482 kb on + strand, within EX28DRAFT_2829at 133.483 kb on - strand, within EX28DRAFT_2829at 133.483 kb on - strand, within EX28DRAFT_2829at 133.517 kb on - strand, within EX28DRAFT_2829at 133.517 kb on - strand, within EX28DRAFT_2829at 133.517 kb on - strand, within EX28DRAFT_2829at 133.528 kb on + strand, within EX28DRAFT_2829at 133.717 kb on + strand, within EX28DRAFT_2829at 133.717 kb on + strand, within EX28DRAFT_2829at 133.718 kb on - strand, within EX28DRAFT_2829at 133.718 kb on - strand, within EX28DRAFT_2829at 133.893 kb on + strand, within EX28DRAFT_2829at 133.893 kb on + strand, within EX28DRAFT_2829at 133.893 kb on + strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.925 kb on - strandat 133.925 kb on - strandat 134.043 kb on + strandat 134.153 kb on - strandat 134.280 kb on + strandat 134.318 kb on + strandat 134.318 kb on + strandat 134.439 kb on + strand, within EX28DRAFT_2830at 134.439 kb on + strand, within EX28DRAFT_2830at 134.440 kb on - strand, within EX28DRAFT_2830at 134.440 kb on - strand, within EX28DRAFT_2830at 134.506 kb on + strand, within EX28DRAFT_2830at 134.788 kb on - strand, within EX28DRAFT_2831at 134.832 kb on + strand, within EX28DRAFT_2831at 134.924 kb on + strand, within EX28DRAFT_2831at 134.925 kb on - strand, within EX28DRAFT_2831at 134.947 kb on + strand, within EX28DRAFT_2831at 134.988 kb on - strand, within EX28DRAFT_2831at 135.031 kb on + strand, within EX28DRAFT_2831at 135.062 kb on - strand, within EX28DRAFT_2831at 135.139 kb on + strand, within EX28DRAFT_2831at 135.139 kb on + strand, within EX28DRAFT_2831

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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130,665 - +0.1
130,766 + +0.2
130,766 + -0.1
130,845 + EX28DRAFT_2827 0.28 -0.2
130,846 - EX28DRAFT_2827 0.28 -0.0
130,957 - EX28DRAFT_2827 0.60 +0.7
130,957 - EX28DRAFT_2827 0.60 +0.4
131,036 + EX28DRAFT_2827 0.83 +0.9
131,037 - EX28DRAFT_2827 0.83 -0.4
131,223 + +0.4
131,269 + -0.1
131,298 - EX28DRAFT_2828 0.12 -0.2
131,319 - EX28DRAFT_2828 0.21 -0.2
131,392 - EX28DRAFT_2828 0.53 -0.0
131,423 - EX28DRAFT_2828 0.66 -0.4
131,478 + -0.3
131,546 - -0.3
131,546 - -0.2
131,607 + -0.5
131,607 + +0.2
131,608 - -0.2
131,663 - -0.2
131,729 + +0.7
131,729 + +0.2
131,730 - +0.1
131,730 - -2.2
131,730 - -0.3
131,745 + +0.8
131,823 + -0.4
131,824 - -1.0
132,063 + EX28DRAFT_2829 0.18 -0.3
132,063 + EX28DRAFT_2829 0.18 -0.8
132,063 + EX28DRAFT_2829 0.18 +0.2
132,064 - EX28DRAFT_2829 0.18 +0.5
132,064 - EX28DRAFT_2829 0.18 -0.9
132,064 - EX28DRAFT_2829 0.18 -0.2
132,384 + EX28DRAFT_2829 0.30 +0.2
132,439 - EX28DRAFT_2829 0.32 +1.9
132,474 - EX28DRAFT_2829 0.34 +0.2
132,480 + EX28DRAFT_2829 0.34 +0.7
132,481 - EX28DRAFT_2829 0.34 -0.1
132,504 + EX28DRAFT_2829 0.35 +0.6
132,550 - EX28DRAFT_2829 0.37 -0.6
132,814 - EX28DRAFT_2829 0.47 -0.5
132,898 + EX28DRAFT_2829 0.50 +0.1
132,898 + EX28DRAFT_2829 0.50 -0.2
133,033 + EX28DRAFT_2829 0.55 +0.8
133,034 - EX28DRAFT_2829 0.55 +0.8
133,114 + EX28DRAFT_2829 0.59 +0.0
133,138 + EX28DRAFT_2829 0.59 +0.5
133,195 + EX28DRAFT_2829 0.62 +2.5
133,196 - EX28DRAFT_2829 0.62 +0.5
133,196 - EX28DRAFT_2829 0.62 -0.7
133,312 + EX28DRAFT_2829 0.66 +0.7
133,312 + EX28DRAFT_2829 0.66 +0.9
133,312 + EX28DRAFT_2829 0.66 +0.1
133,313 - EX28DRAFT_2829 0.66 -0.3
133,313 - EX28DRAFT_2829 0.66 -0.7
133,314 + EX28DRAFT_2829 0.66 +1.0
133,315 - EX28DRAFT_2829 0.66 -0.0
133,376 + EX28DRAFT_2829 0.69 -0.5
133,476 + EX28DRAFT_2829 0.73 +0.5
133,477 - EX28DRAFT_2829 0.73 -0.2
133,480 + EX28DRAFT_2829 0.73 -0.3
133,480 + EX28DRAFT_2829 0.73 +0.3
133,480 + EX28DRAFT_2829 0.73 +0.4
133,480 + EX28DRAFT_2829 0.73 +0.9
133,480 + EX28DRAFT_2829 0.73 -0.4
133,480 + EX28DRAFT_2829 0.73 -0.4
133,480 + EX28DRAFT_2829 0.73 -0.5
133,480 + EX28DRAFT_2829 0.73 -0.5
133,481 - EX28DRAFT_2829 0.73 -0.0
133,481 - EX28DRAFT_2829 0.73 -0.1
133,482 + EX28DRAFT_2829 0.73 -0.3
133,483 - EX28DRAFT_2829 0.73 -0.4
133,483 - EX28DRAFT_2829 0.73 +0.3
133,517 - EX28DRAFT_2829 0.74 +0.2
133,517 - EX28DRAFT_2829 0.74 -0.0
133,517 - EX28DRAFT_2829 0.74 -0.5
133,528 + EX28DRAFT_2829 0.75 +0.4
133,717 + EX28DRAFT_2829 0.82 -0.6
133,717 + EX28DRAFT_2829 0.82 +0.2
133,718 - EX28DRAFT_2829 0.82 +0.3
133,718 - EX28DRAFT_2829 0.82 -1.5
133,893 + EX28DRAFT_2829 0.89 +0.6
133,893 + EX28DRAFT_2829 0.89 -0.4
133,893 + EX28DRAFT_2829 0.89 +1.0
133,894 - EX28DRAFT_2829 0.89 +0.2
133,894 - EX28DRAFT_2829 0.89 +0.0
133,894 - EX28DRAFT_2829 0.89 +0.5
133,894 - EX28DRAFT_2829 0.89 +0.0
133,894 - EX28DRAFT_2829 0.89 +0.3
133,925 - -1.0
133,925 - -0.1
134,043 + -0.1
134,153 - +0.2
134,280 + -0.3
134,318 + +0.3
134,318 + -0.7
134,439 + EX28DRAFT_2830 0.56 +0.5
134,439 + EX28DRAFT_2830 0.56 -0.8
134,440 - EX28DRAFT_2830 0.56 -0.3
134,440 - EX28DRAFT_2830 0.56 -0.2
134,506 + EX28DRAFT_2830 0.86 -0.2
134,788 - EX28DRAFT_2831 0.17 +0.1
134,832 + EX28DRAFT_2831 0.20 +0.3
134,924 + EX28DRAFT_2831 0.26 -0.6
134,925 - EX28DRAFT_2831 0.26 +0.5
134,947 + EX28DRAFT_2831 0.28 +0.0
134,988 - EX28DRAFT_2831 0.31 -0.6
135,031 + EX28DRAFT_2831 0.34 -0.0
135,062 - EX28DRAFT_2831 0.36 +0.7
135,139 + EX28DRAFT_2831 0.41 -0.5
135,139 + EX28DRAFT_2831 0.41 -0.1

Or see this region's nucleotide sequence