Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2714 and EX28DRAFT_2715 are separated by 64 nucleotides EX28DRAFT_2715 and EX28DRAFT_2716 are separated by 51 nucleotides EX28DRAFT_2716 and EX28DRAFT_2717 overlap by 8 nucleotides EX28DRAFT_2717 and EX28DRAFT_2718 are separated by 13 nucleotides
EX28DRAFT_2714: EX28DRAFT_2714 - ABC-type uncharacterized transport system, permease component, at 19,455 to 20,321
_2714
EX28DRAFT_2715: EX28DRAFT_2715 - Putative Mg2+ and Co2+ transporter CorB, at 20,386 to 21,627
_2715
EX28DRAFT_2716: EX28DRAFT_2716 - Molecular chaperone GrpE (heat shock protein), at 21,679 to 22,272
_2716
EX28DRAFT_2717: EX28DRAFT_2717 - hypothetical protein, at 22,265 to 22,381
_2717
EX28DRAFT_2718: EX28DRAFT_2718 - Predicted sugar kinase, at 22,395 to 23,273
_2718
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1 at 19.430 kb on - strand at 19.489 kb on + strand at 19.490 kb on - strand at 19.505 kb on + strand at 19.506 kb on - strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.527 kb on + strand at 19.528 kb on - strand at 19.528 kb on - strand at 19.529 kb on + strand at 19.529 kb on + strand at 19.530 kb on - strand at 19.820 kb on + strand, within EX28DRAFT_2714 at 19.820 kb on + strand, within EX28DRAFT_2714 at 19.986 kb on + strand, within EX28DRAFT_2714 at 20.119 kb on - strand, within EX28DRAFT_2714 at 20.187 kb on + strand, within EX28DRAFT_2714 at 20.188 kb on - strand, within EX28DRAFT_2714 at 20.188 kb on - strand, within EX28DRAFT_2714 at 20.189 kb on + strand, within EX28DRAFT_2714 at 20.189 kb on + strand, within EX28DRAFT_2714 at 20.189 kb on + strand, within EX28DRAFT_2714 at 20.189 kb on + strand, within EX28DRAFT_2714 at 20.190 kb on - strand, within EX28DRAFT_2714 at 20.190 kb on - strand, within EX28DRAFT_2714 at 20.190 kb on - strand, within EX28DRAFT_2714 at 20.283 kb on + strand at 20.284 kb on - strand at 20.302 kb on + strand at 20.303 kb on - strand at 20.320 kb on - strand at 20.355 kb on + strand at 20.454 kb on - strand at 20.466 kb on + strand at 20.467 kb on - strand at 20.467 kb on - strand at 20.529 kb on - strand, within EX28DRAFT_2715 at 21.178 kb on + strand, within EX28DRAFT_2715 at 21.182 kb on - strand, within EX28DRAFT_2715 at 21.265 kb on + strand, within EX28DRAFT_2715 at 21.300 kb on + strand, within EX28DRAFT_2715 at 21.301 kb on - strand, within EX28DRAFT_2715 at 21.327 kb on + strand, within EX28DRAFT_2715 at 21.327 kb on + strand, within EX28DRAFT_2715 at 21.327 kb on + strand, within EX28DRAFT_2715 at 21.573 kb on + strand at 21.574 kb on - strand at 21.574 kb on - strand at 21.615 kb on + strand at 21.616 kb on - strand at 21.625 kb on + strand at 21.626 kb on - strand at 21.633 kb on + strand at 21.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 19,430 - +0.7 19,489 + +0.1 19,490 - -1.2 19,505 + -0.4 19,506 - +0.2 19,527 + +0.2 19,527 + -0.2 19,527 + -0.2 19,527 + +1.1 19,527 + +0.3 19,527 + +0.3 19,527 + -0.1 19,527 + -0.4 19,527 + -0.1 19,528 - -1.2 19,528 - +0.2 19,529 + +0.2 19,529 + +0.9 19,530 - +0.1 19,820 + EX28DRAFT_2714 0.42 +0.2 19,820 + EX28DRAFT_2714 0.42 -0.5 19,986 + EX28DRAFT_2714 0.61 +1.1 20,119 - EX28DRAFT_2714 0.77 -0.0 20,187 + EX28DRAFT_2714 0.84 -0.0 20,188 - EX28DRAFT_2714 0.85 -0.7 20,188 - EX28DRAFT_2714 0.85 -0.5 20,189 + EX28DRAFT_2714 0.85 +0.7 20,189 + EX28DRAFT_2714 0.85 +0.3 20,189 + EX28DRAFT_2714 0.85 -0.1 20,189 + EX28DRAFT_2714 0.85 -0.2 20,190 - EX28DRAFT_2714 0.85 +0.3 20,190 - EX28DRAFT_2714 0.85 +0.4 20,190 - EX28DRAFT_2714 0.85 +0.4 20,283 + -1.2 20,284 - -0.5 20,302 + -0.5 20,303 - +0.6 20,320 - +0.0 20,355 + -0.4 20,454 - -0.3 20,466 + -0.1 20,467 - -0.4 20,467 - +1.1 20,529 - EX28DRAFT_2715 0.12 -0.0 21,178 + EX28DRAFT_2715 0.64 -1.1 21,182 - EX28DRAFT_2715 0.64 -0.0 21,265 + EX28DRAFT_2715 0.71 -0.4 21,300 + EX28DRAFT_2715 0.74 -0.8 21,301 - EX28DRAFT_2715 0.74 -0.5 21,327 + EX28DRAFT_2715 0.76 +0.4 21,327 + EX28DRAFT_2715 0.76 -1.0 21,327 + EX28DRAFT_2715 0.76 -0.6 21,573 + +0.1 21,574 - -0.3 21,574 - -0.3 21,615 + +0.3 21,616 - +0.2 21,625 + +0.0 21,626 - -0.3 21,633 + -0.2 21,680 + -0.5
Or see this region's nucleotide sequence