Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2602

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2601 and EX28DRAFT_2602 are separated by 127 nucleotidesEX28DRAFT_2602 and EX28DRAFT_2603 are separated by 69 nucleotidesEX28DRAFT_2603 and EX28DRAFT_2604 overlap by 4 nucleotides EX28DRAFT_2601: EX28DRAFT_2601 - Delta-aminolevulinic acid dehydratase, at 2,636,883 to 2,637,857 _2601 EX28DRAFT_2602: EX28DRAFT_2602 - Putative hemolysin, at 2,637,985 to 2,639,709 _2602 EX28DRAFT_2603: EX28DRAFT_2603 - Probable taurine catabolism dioxygenase, at 2,639,779 to 2,640,630 _2603 EX28DRAFT_2604: EX28DRAFT_2604 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,640,627 to 2,641,454 _2604 Position (kb) 2637 2638 2639 2640Strain fitness (log2 ratio) -2 -1 0 1at 2637.930 kb on + strandat 2637.930 kb on + strandat 2637.952 kb on + strandat 2637.953 kb on - strandat 2637.981 kb on - strandat 2638.159 kb on - strand, within EX28DRAFT_2602at 2638.296 kb on + strand, within EX28DRAFT_2602at 2638.296 kb on + strand, within EX28DRAFT_2602at 2638.296 kb on + strand, within EX28DRAFT_2602at 2638.297 kb on - strand, within EX28DRAFT_2602at 2638.350 kb on + strand, within EX28DRAFT_2602at 2638.365 kb on + strand, within EX28DRAFT_2602at 2638.583 kb on - strand, within EX28DRAFT_2602at 2638.870 kb on - strand, within EX28DRAFT_2602at 2638.881 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.892 kb on - strand, within EX28DRAFT_2602at 2638.892 kb on - strand, within EX28DRAFT_2602at 2638.892 kb on - strand, within EX28DRAFT_2602at 2638.892 kb on - strand, within EX28DRAFT_2602at 2638.893 kb on + strand, within EX28DRAFT_2602at 2638.893 kb on + strand, within EX28DRAFT_2602at 2638.893 kb on + strand, within EX28DRAFT_2602at 2638.894 kb on - strand, within EX28DRAFT_2602at 2639.128 kb on + strand, within EX28DRAFT_2602at 2639.128 kb on + strand, within EX28DRAFT_2602at 2639.128 kb on + strand, within EX28DRAFT_2602at 2639.129 kb on - strand, within EX28DRAFT_2602at 2639.129 kb on - strand, within EX28DRAFT_2602at 2639.134 kb on + strand, within EX28DRAFT_2602at 2639.135 kb on - strand, within EX28DRAFT_2602at 2639.135 kb on - strand, within EX28DRAFT_2602at 2639.205 kb on + strand, within EX28DRAFT_2602at 2639.242 kb on + strand, within EX28DRAFT_2602at 2639.243 kb on - strand, within EX28DRAFT_2602at 2639.243 kb on - strand, within EX28DRAFT_2602at 2639.246 kb on + strand, within EX28DRAFT_2602at 2639.247 kb on - strand, within EX28DRAFT_2602at 2639.247 kb on - strand, within EX28DRAFT_2602at 2639.293 kb on + strand, within EX28DRAFT_2602at 2639.572 kb on - strandat 2639.572 kb on - strandat 2639.572 kb on - strandat 2639.667 kb on + strandat 2639.667 kb on + strandat 2639.681 kb on + strandat 2639.682 kb on - strandat 2639.849 kb on + strandat 2639.864 kb on + strandat 2640.146 kb on + strand, within EX28DRAFT_2603at 2640.227 kb on + strand, within EX28DRAFT_2603at 2640.325 kb on + strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.592 kb on - strandat 2640.593 kb on + strandat 2640.593 kb on + strandat 2640.634 kb on - strandat 2640.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,637,930 + +0.1
2,637,930 + -0.7
2,637,952 + -0.1
2,637,953 - -0.5
2,637,981 - +0.0
2,638,159 - EX28DRAFT_2602 0.10 +0.3
2,638,296 + EX28DRAFT_2602 0.18 +0.0
2,638,296 + EX28DRAFT_2602 0.18 +0.1
2,638,296 + EX28DRAFT_2602 0.18 -0.8
2,638,297 - EX28DRAFT_2602 0.18 -0.1
2,638,350 + EX28DRAFT_2602 0.21 -1.6
2,638,365 + EX28DRAFT_2602 0.22 -0.2
2,638,583 - EX28DRAFT_2602 0.35 +0.2
2,638,870 - EX28DRAFT_2602 0.51 -0.6
2,638,881 + EX28DRAFT_2602 0.52 +0.2
2,638,891 + EX28DRAFT_2602 0.53 +0.1
2,638,891 + EX28DRAFT_2602 0.53 +1.2
2,638,891 + EX28DRAFT_2602 0.53 -0.1
2,638,891 + EX28DRAFT_2602 0.53 +1.0
2,638,891 + EX28DRAFT_2602 0.53 +0.4
2,638,891 + EX28DRAFT_2602 0.53 +0.7
2,638,892 - EX28DRAFT_2602 0.53 +0.5
2,638,892 - EX28DRAFT_2602 0.53 +0.7
2,638,892 - EX28DRAFT_2602 0.53 +1.3
2,638,892 - EX28DRAFT_2602 0.53 +0.0
2,638,893 + EX28DRAFT_2602 0.53 -0.5
2,638,893 + EX28DRAFT_2602 0.53 -0.2
2,638,893 + EX28DRAFT_2602 0.53 +0.3
2,638,894 - EX28DRAFT_2602 0.53 +0.2
2,639,128 + EX28DRAFT_2602 0.66 +0.2
2,639,128 + EX28DRAFT_2602 0.66 +0.5
2,639,128 + EX28DRAFT_2602 0.66 +0.9
2,639,129 - EX28DRAFT_2602 0.66 +0.3
2,639,129 - EX28DRAFT_2602 0.66 +0.2
2,639,134 + EX28DRAFT_2602 0.67 -0.7
2,639,135 - EX28DRAFT_2602 0.67 -0.6
2,639,135 - EX28DRAFT_2602 0.67 -0.2
2,639,205 + EX28DRAFT_2602 0.71 +0.4
2,639,242 + EX28DRAFT_2602 0.73 -0.5
2,639,243 - EX28DRAFT_2602 0.73 -0.6
2,639,243 - EX28DRAFT_2602 0.73 -0.7
2,639,246 + EX28DRAFT_2602 0.73 +0.7
2,639,247 - EX28DRAFT_2602 0.73 +0.3
2,639,247 - EX28DRAFT_2602 0.73 +0.1
2,639,293 + EX28DRAFT_2602 0.76 -0.5
2,639,572 - +0.3
2,639,572 - -0.0
2,639,572 - +0.3
2,639,667 + -1.9
2,639,667 + +0.3
2,639,681 + +0.4
2,639,682 - -0.1
2,639,849 + -1.2
2,639,864 + +0.2
2,640,146 + EX28DRAFT_2603 0.43 -1.1
2,640,227 + EX28DRAFT_2603 0.53 -0.2
2,640,325 + EX28DRAFT_2603 0.64 +0.8
2,640,525 - EX28DRAFT_2603 0.88 -0.1
2,640,525 - EX28DRAFT_2603 0.88 -0.8
2,640,525 - EX28DRAFT_2603 0.88 +1.1
2,640,592 - -0.1
2,640,593 + +0.0
2,640,593 + -1.5
2,640,634 - -0.1
2,640,634 - -1.9

Or see this region's nucleotide sequence