Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2529 and EX28DRAFT_2530 are separated by 212 nucleotides EX28DRAFT_2530 and EX28DRAFT_2531 are separated by 210 nucleotides
EX28DRAFT_2529: EX28DRAFT_2529 - Parvulin-like peptidyl-prolyl isomerase, at 2,559,413 to 2,561,284
_2529
EX28DRAFT_2530: EX28DRAFT_2530 - Bacterial nucleoid DNA-binding protein, at 2,561,497 to 2,561,769
_2530
EX28DRAFT_2531: EX28DRAFT_2531 - endopeptidase La, at 2,561,980 to 2,564,334
_2531
Position (kb)
2561
2562 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2560.580 kb on - strand, within EX28DRAFT_2529 at 2560.581 kb on + strand, within EX28DRAFT_2529 at 2560.581 kb on + strand, within EX28DRAFT_2529 at 2560.581 kb on + strand, within EX28DRAFT_2529 at 2560.633 kb on - strand, within EX28DRAFT_2529 at 2560.636 kb on - strand, within EX28DRAFT_2529 at 2560.831 kb on - strand, within EX28DRAFT_2529 at 2561.163 kb on + strand at 2561.188 kb on - strand at 2561.271 kb on - strand at 2561.290 kb on - strand at 2561.362 kb on - strand at 2561.465 kb on + strand at 2561.466 kb on - strand at 2561.524 kb on - strand at 2561.686 kb on + strand, within EX28DRAFT_2530 at 2561.695 kb on + strand, within EX28DRAFT_2530 at 2561.788 kb on - strand at 2561.795 kb on - strand at 2561.795 kb on - strand at 2561.836 kb on + strand at 2561.858 kb on + strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.886 kb on - strand at 2561.886 kb on - strand at 2561.886 kb on - strand at 2561.898 kb on - strand at 2561.902 kb on + strand at 2561.902 kb on + strand at 2561.906 kb on + strand at 2561.907 kb on - strand at 2561.908 kb on + strand at 2561.940 kb on + strand at 2561.941 kb on - strand at 2561.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,560,580 - EX28DRAFT_2529 0.62 -0.6 2,560,581 + EX28DRAFT_2529 0.62 +0.2 2,560,581 + EX28DRAFT_2529 0.62 -0.1 2,560,581 + EX28DRAFT_2529 0.62 +0.5 2,560,633 - EX28DRAFT_2529 0.65 +1.1 2,560,636 - EX28DRAFT_2529 0.65 -0.2 2,560,831 - EX28DRAFT_2529 0.76 -0.9 2,561,163 + +0.1 2,561,188 - -1.3 2,561,271 - +0.1 2,561,290 - -0.0 2,561,362 - +0.5 2,561,465 + +0.7 2,561,466 - +0.7 2,561,524 - +0.7 2,561,686 + EX28DRAFT_2530 0.69 -0.5 2,561,695 + EX28DRAFT_2530 0.73 -1.0 2,561,788 - +0.3 2,561,795 - -0.1 2,561,795 - +0.1 2,561,836 + -0.4 2,561,858 + -0.4 2,561,859 - -0.5 2,561,859 - +0.1 2,561,859 - +0.6 2,561,859 - +1.9 2,561,886 - -0.2 2,561,886 - -1.0 2,561,886 - -0.1 2,561,898 - +0.1 2,561,902 + +0.2 2,561,902 + +0.3 2,561,906 + +1.1 2,561,907 - -0.1 2,561,908 + +0.2 2,561,940 + -1.8 2,561,941 - +0.4 2,561,955 + -0.2
Or see this region's nucleotide sequence