Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2461

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2460 and EX28DRAFT_2461 are separated by 84 nucleotidesEX28DRAFT_2461 and EX28DRAFT_2462 are separated by 125 nucleotides EX28DRAFT_2460: EX28DRAFT_2460 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 2,488,630 to 2,489,697 _2460 EX28DRAFT_2461: EX28DRAFT_2461 - tRNA 2-selenouridine synthase, at 2,489,782 to 2,490,852 _2461 EX28DRAFT_2462: EX28DRAFT_2462 - hypothetical protein, at 2,490,978 to 2,492,123 _2462 Position (kb) 2489 2490 2491Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2489.254 kb on - strand, within EX28DRAFT_2460at 2489.284 kb on + strand, within EX28DRAFT_2460at 2489.569 kb on - strand, within EX28DRAFT_2460at 2489.695 kb on + strandat 2489.696 kb on - strandat 2489.738 kb on + strandat 2489.738 kb on + strandat 2489.739 kb on - strandat 2489.935 kb on + strand, within EX28DRAFT_2461at 2489.935 kb on + strand, within EX28DRAFT_2461at 2489.935 kb on + strand, within EX28DRAFT_2461at 2490.087 kb on + strand, within EX28DRAFT_2461at 2490.088 kb on - strand, within EX28DRAFT_2461at 2490.148 kb on - strand, within EX28DRAFT_2461at 2490.148 kb on - strand, within EX28DRAFT_2461at 2490.529 kb on + strand, within EX28DRAFT_2461at 2490.601 kb on + strand, within EX28DRAFT_2461at 2490.754 kb on + strandat 2490.755 kb on - strandat 2490.757 kb on + strandat 2490.758 kb on - strandat 2490.769 kb on + strandat 2490.908 kb on + strandat 2490.968 kb on - strandat 2490.968 kb on - strandat 2490.968 kb on - strandat 2490.979 kb on + strandat 2491.115 kb on - strand, within EX28DRAFT_2462at 2491.132 kb on + strand, within EX28DRAFT_2462at 2491.133 kb on - strand, within EX28DRAFT_2462at 2491.133 kb on - strand, within EX28DRAFT_2462at 2491.139 kb on + strand, within EX28DRAFT_2462at 2491.140 kb on - strand, within EX28DRAFT_2462at 2491.156 kb on + strand, within EX28DRAFT_2462at 2491.172 kb on + strand, within EX28DRAFT_2462at 2491.173 kb on - strand, within EX28DRAFT_2462at 2491.361 kb on - strand, within EX28DRAFT_2462at 2491.408 kb on + strand, within EX28DRAFT_2462at 2491.408 kb on + strand, within EX28DRAFT_2462at 2491.409 kb on - strand, within EX28DRAFT_2462at 2491.510 kb on + strand, within EX28DRAFT_2462at 2491.511 kb on - strand, within EX28DRAFT_2462at 2491.531 kb on + strand, within EX28DRAFT_2462at 2491.540 kb on + strand, within EX28DRAFT_2462at 2491.540 kb on + strand, within EX28DRAFT_2462at 2491.540 kb on + strand, within EX28DRAFT_2462at 2491.540 kb on + strand, within EX28DRAFT_2462at 2491.541 kb on - strand, within EX28DRAFT_2462at 2491.541 kb on - strand, within EX28DRAFT_2462at 2491.541 kb on - strand, within EX28DRAFT_2462at 2491.568 kb on + strand, within EX28DRAFT_2462at 2491.569 kb on - strand, within EX28DRAFT_2462at 2491.606 kb on + strand, within EX28DRAFT_2462at 2491.651 kb on + strand, within EX28DRAFT_2462at 2491.652 kb on - strand, within EX28DRAFT_2462at 2491.687 kb on + strand, within EX28DRAFT_2462at 2491.687 kb on + strand, within EX28DRAFT_2462at 2491.688 kb on - strand, within EX28DRAFT_2462at 2491.691 kb on - strand, within EX28DRAFT_2462at 2491.750 kb on + strand, within EX28DRAFT_2462at 2491.758 kb on - strand, within EX28DRAFT_2462at 2491.758 kb on - strand, within EX28DRAFT_2462at 2491.790 kb on - strand, within EX28DRAFT_2462at 2491.821 kb on - strand, within EX28DRAFT_2462at 2491.841 kb on - strand, within EX28DRAFT_2462at 2491.841 kb on - strand, within EX28DRAFT_2462

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,489,254 - EX28DRAFT_2460 0.58 +3.4
2,489,284 + EX28DRAFT_2460 0.61 +1.8
2,489,569 - EX28DRAFT_2460 0.88 -0.5
2,489,695 + +0.7
2,489,696 - -0.1
2,489,738 + +0.6
2,489,738 + +0.5
2,489,739 - -0.6
2,489,935 + EX28DRAFT_2461 0.14 -0.2
2,489,935 + EX28DRAFT_2461 0.14 -0.6
2,489,935 + EX28DRAFT_2461 0.14 -0.5
2,490,087 + EX28DRAFT_2461 0.28 -0.2
2,490,088 - EX28DRAFT_2461 0.29 +0.1
2,490,148 - EX28DRAFT_2461 0.34 -0.4
2,490,148 - EX28DRAFT_2461 0.34 -0.5
2,490,529 + EX28DRAFT_2461 0.70 -0.6
2,490,601 + EX28DRAFT_2461 0.76 +0.5
2,490,754 + +0.2
2,490,755 - -0.9
2,490,757 + -0.2
2,490,758 - +0.2
2,490,769 + +0.3
2,490,908 + +1.6
2,490,968 - +0.6
2,490,968 - -0.1
2,490,968 - -0.5
2,490,979 + -0.3
2,491,115 - EX28DRAFT_2462 0.12 -0.3
2,491,132 + EX28DRAFT_2462 0.13 +1.2
2,491,133 - EX28DRAFT_2462 0.14 -0.1
2,491,133 - EX28DRAFT_2462 0.14 +0.1
2,491,139 + EX28DRAFT_2462 0.14 +1.5
2,491,140 - EX28DRAFT_2462 0.14 +0.6
2,491,156 + EX28DRAFT_2462 0.16 -0.0
2,491,172 + EX28DRAFT_2462 0.17 -1.8
2,491,173 - EX28DRAFT_2462 0.17 +0.3
2,491,361 - EX28DRAFT_2462 0.33 -1.4
2,491,408 + EX28DRAFT_2462 0.38 -0.6
2,491,408 + EX28DRAFT_2462 0.38 +0.5
2,491,409 - EX28DRAFT_2462 0.38 +1.3
2,491,510 + EX28DRAFT_2462 0.46 +0.2
2,491,511 - EX28DRAFT_2462 0.47 -0.2
2,491,531 + EX28DRAFT_2462 0.48 -0.1
2,491,540 + EX28DRAFT_2462 0.49 +1.5
2,491,540 + EX28DRAFT_2462 0.49 -1.3
2,491,540 + EX28DRAFT_2462 0.49 +0.1
2,491,540 + EX28DRAFT_2462 0.49 -0.6
2,491,541 - EX28DRAFT_2462 0.49 -0.5
2,491,541 - EX28DRAFT_2462 0.49 -0.4
2,491,541 - EX28DRAFT_2462 0.49 -0.1
2,491,568 + EX28DRAFT_2462 0.51 -0.0
2,491,569 - EX28DRAFT_2462 0.52 -0.3
2,491,606 + EX28DRAFT_2462 0.55 +0.0
2,491,651 + EX28DRAFT_2462 0.59 +0.3
2,491,652 - EX28DRAFT_2462 0.59 -1.3
2,491,687 + EX28DRAFT_2462 0.62 +0.0
2,491,687 + EX28DRAFT_2462 0.62 +0.0
2,491,688 - EX28DRAFT_2462 0.62 -0.8
2,491,691 - EX28DRAFT_2462 0.62 -0.2
2,491,750 + EX28DRAFT_2462 0.67 -0.8
2,491,758 - EX28DRAFT_2462 0.68 -0.7
2,491,758 - EX28DRAFT_2462 0.68 +1.0
2,491,790 - EX28DRAFT_2462 0.71 +0.5
2,491,821 - EX28DRAFT_2462 0.74 +1.2
2,491,841 - EX28DRAFT_2462 0.75 +0.8
2,491,841 - EX28DRAFT_2462 0.75 -1.0

Or see this region's nucleotide sequence