Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2194 and EX28DRAFT_2195 are separated by 207 nucleotides EX28DRAFT_2195 and EX28DRAFT_2196 overlap by 4 nucleotides EX28DRAFT_2196 and EX28DRAFT_2197 overlap by 8 nucleotides
EX28DRAFT_2194: EX28DRAFT_2194 - Superfamily II DNA and RNA helicases, at 2,217,509 to 2,218,894
_2194
EX28DRAFT_2195: EX28DRAFT_2195 - transcriptional regulator, TetR family, at 2,219,102 to 2,219,779
_2195
EX28DRAFT_2196: EX28DRAFT_2196 - Multidrug resistance efflux pump, at 2,219,776 to 2,220,771
_2196
EX28DRAFT_2197: EX28DRAFT_2197 - ABC-type multidrug transport system, ATPase component, at 2,220,764 to 2,222,503
_2197
Position (kb)
2219
2220
2221 Strain fitness (log2 ratio)
-1
0
1
2 at 2218.834 kb on - strand at 2218.895 kb on - strand at 2218.928 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.945 kb on + strand at 2218.945 kb on + strand at 2218.945 kb on + strand at 2219.023 kb on + strand at 2219.064 kb on - strand at 2219.107 kb on + strand at 2219.253 kb on - strand, within EX28DRAFT_2195 at 2219.274 kb on + strand, within EX28DRAFT_2195 at 2219.274 kb on + strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.417 kb on - strand, within EX28DRAFT_2195 at 2219.443 kb on + strand, within EX28DRAFT_2195 at 2219.444 kb on - strand, within EX28DRAFT_2195 at 2219.465 kb on - strand, within EX28DRAFT_2195 at 2219.564 kb on + strand, within EX28DRAFT_2195 at 2219.565 kb on - strand, within EX28DRAFT_2195 at 2219.566 kb on + strand, within EX28DRAFT_2195 at 2219.566 kb on + strand, within EX28DRAFT_2195 at 2219.866 kb on - strand at 2219.895 kb on + strand, within EX28DRAFT_2196 at 2219.911 kb on - strand, within EX28DRAFT_2196 at 2220.064 kb on + strand, within EX28DRAFT_2196 at 2220.065 kb on - strand, within EX28DRAFT_2196 at 2220.124 kb on - strand, within EX28DRAFT_2196 at 2220.278 kb on + strand, within EX28DRAFT_2196 at 2220.279 kb on - strand, within EX28DRAFT_2196 at 2220.393 kb on - strand, within EX28DRAFT_2196 at 2220.562 kb on + strand, within EX28DRAFT_2196 at 2220.564 kb on + strand, within EX28DRAFT_2196 at 2220.564 kb on + strand, within EX28DRAFT_2196 at 2220.740 kb on + strand at 2220.740 kb on + strand at 2220.863 kb on + strand at 2221.013 kb on + strand, within EX28DRAFT_2197 at 2221.013 kb on + strand, within EX28DRAFT_2197 at 2221.037 kb on + strand, within EX28DRAFT_2197 at 2221.139 kb on - strand, within EX28DRAFT_2197 at 2221.269 kb on + strand, within EX28DRAFT_2197 at 2221.270 kb on - strand, within EX28DRAFT_2197 at 2221.629 kb on + strand, within EX28DRAFT_2197 at 2221.720 kb on + strand, within EX28DRAFT_2197 at 2221.720 kb on + strand, within EX28DRAFT_2197 at 2221.721 kb on - strand, within EX28DRAFT_2197
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,218,834 - +0.7 2,218,895 - +0.7 2,218,928 + -0.3 2,218,943 + -0.1 2,218,943 + -0.2 2,218,943 + -0.2 2,218,943 + -0.3 2,218,944 - +0.4 2,218,944 - -0.6 2,218,944 - -0.0 2,218,944 - +0.1 2,218,945 + +1.1 2,218,945 + +0.3 2,218,945 + -0.5 2,219,023 + +0.3 2,219,064 - +0.2 2,219,107 + -0.9 2,219,253 - EX28DRAFT_2195 0.22 -0.6 2,219,274 + EX28DRAFT_2195 0.25 +1.8 2,219,274 + EX28DRAFT_2195 0.25 -0.5 2,219,275 - EX28DRAFT_2195 0.26 +0.9 2,219,275 - EX28DRAFT_2195 0.26 -0.2 2,219,275 - EX28DRAFT_2195 0.26 +0.3 2,219,417 - EX28DRAFT_2195 0.46 -0.4 2,219,443 + EX28DRAFT_2195 0.50 +0.7 2,219,444 - EX28DRAFT_2195 0.50 -1.0 2,219,465 - EX28DRAFT_2195 0.54 -0.0 2,219,564 + EX28DRAFT_2195 0.68 +0.1 2,219,565 - EX28DRAFT_2195 0.68 +0.6 2,219,566 + EX28DRAFT_2195 0.68 -0.3 2,219,566 + EX28DRAFT_2195 0.68 +0.3 2,219,866 - -0.4 2,219,895 + EX28DRAFT_2196 0.12 -0.7 2,219,911 - EX28DRAFT_2196 0.14 +0.8 2,220,064 + EX28DRAFT_2196 0.29 +0.2 2,220,065 - EX28DRAFT_2196 0.29 +0.3 2,220,124 - EX28DRAFT_2196 0.35 +1.5 2,220,278 + EX28DRAFT_2196 0.50 +0.4 2,220,279 - EX28DRAFT_2196 0.51 +0.7 2,220,393 - EX28DRAFT_2196 0.62 +0.4 2,220,562 + EX28DRAFT_2196 0.79 -0.7 2,220,564 + EX28DRAFT_2196 0.79 +0.3 2,220,564 + EX28DRAFT_2196 0.79 +1.1 2,220,740 + +0.0 2,220,740 + -0.5 2,220,863 + -0.5 2,221,013 + EX28DRAFT_2197 0.14 -0.3 2,221,013 + EX28DRAFT_2197 0.14 +0.1 2,221,037 + EX28DRAFT_2197 0.16 -0.1 2,221,139 - EX28DRAFT_2197 0.22 +0.2 2,221,269 + EX28DRAFT_2197 0.29 +0.6 2,221,270 - EX28DRAFT_2197 0.29 -0.1 2,221,629 + EX28DRAFT_2197 0.50 -0.7 2,221,720 + EX28DRAFT_2197 0.55 -0.3 2,221,720 + EX28DRAFT_2197 0.55 -0.5 2,221,721 - EX28DRAFT_2197 0.55 +0.3
Or see this region's nucleotide sequence