Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2124 and EX28DRAFT_2125 are separated by 7 nucleotides EX28DRAFT_2125 and EX28DRAFT_2126 are separated by 67 nucleotides EX28DRAFT_2126 and EX28DRAFT_2127 are separated by 67 nucleotides
EX28DRAFT_2124: EX28DRAFT_2124 - PAP2 (acid phosphatase) superfamily protein, at 2,143,213 to 2,143,941
_2124
EX28DRAFT_2125: EX28DRAFT_2125 - Membrane-associated phospholipid phosphatase, at 2,143,949 to 2,144,557
_2125
EX28DRAFT_2126: EX28DRAFT_2126 - transcriptional regulator, DeoR family, at 2,144,625 to 2,145,383
_2126
EX28DRAFT_2127: EX28DRAFT_2127 - D-alanyl-D-alanine carboxypeptidase, at 2,145,451 to 2,146,656
_2127
Position (kb)
2144
2145
2146 Strain fitness (log2 ratio)
-2
-1
0
1 at 2143.642 kb on - strand, within EX28DRAFT_2124 at 2143.822 kb on + strand, within EX28DRAFT_2124 at 2143.907 kb on - strand at 2143.943 kb on - strand at 2143.948 kb on + strand at 2143.948 kb on + strand at 2143.948 kb on + strand at 2143.949 kb on - strand at 2143.949 kb on - strand at 2143.967 kb on + strand at 2143.967 kb on + strand at 2143.967 kb on + strand at 2143.979 kb on + strand at 2143.979 kb on + strand at 2144.175 kb on - strand, within EX28DRAFT_2125 at 2144.228 kb on + strand, within EX28DRAFT_2125 at 2144.229 kb on - strand, within EX28DRAFT_2125 at 2144.230 kb on + strand, within EX28DRAFT_2125 at 2144.231 kb on - strand, within EX28DRAFT_2125 at 2144.486 kb on + strand, within EX28DRAFT_2125 at 2144.624 kb on + strand at 2144.696 kb on + strand at 2144.789 kb on + strand, within EX28DRAFT_2126 at 2144.789 kb on + strand, within EX28DRAFT_2126 at 2144.789 kb on + strand, within EX28DRAFT_2126 at 2144.789 kb on + strand, within EX28DRAFT_2126 at 2144.790 kb on - strand, within EX28DRAFT_2126 at 2144.790 kb on - strand, within EX28DRAFT_2126 at 2144.790 kb on - strand, within EX28DRAFT_2126 at 2145.179 kb on + strand, within EX28DRAFT_2126 at 2145.378 kb on + strand at 2145.379 kb on - strand at 2145.381 kb on + strand at 2145.381 kb on + strand at 2145.381 kb on + strand at 2145.382 kb on - strand at 2145.382 kb on - strand at 2145.452 kb on + strand at 2145.452 kb on + strand at 2145.452 kb on + strand at 2145.453 kb on - strand at 2145.544 kb on + strand at 2145.545 kb on - strand at 2145.545 kb on - strand at 2145.573 kb on + strand, within EX28DRAFT_2127 at 2145.574 kb on - strand, within EX28DRAFT_2127 at 2145.653 kb on + strand, within EX28DRAFT_2127 at 2145.653 kb on + strand, within EX28DRAFT_2127 at 2145.800 kb on + strand, within EX28DRAFT_2127 at 2145.922 kb on - strand, within EX28DRAFT_2127 at 2146.015 kb on - strand, within EX28DRAFT_2127 at 2146.267 kb on - strand, within EX28DRAFT_2127 at 2146.270 kb on + strand, within EX28DRAFT_2127
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,143,642 - EX28DRAFT_2124 0.59 +1.0 2,143,822 + EX28DRAFT_2124 0.84 -0.0 2,143,907 - -0.3 2,143,943 - +0.1 2,143,948 + -0.0 2,143,948 + +0.3 2,143,948 + +0.1 2,143,949 - -0.0 2,143,949 - -0.3 2,143,967 + +1.0 2,143,967 + +0.2 2,143,967 + -0.9 2,143,979 + +0.2 2,143,979 + +0.5 2,144,175 - EX28DRAFT_2125 0.37 -0.7 2,144,228 + EX28DRAFT_2125 0.46 -0.4 2,144,229 - EX28DRAFT_2125 0.46 +1.4 2,144,230 + EX28DRAFT_2125 0.46 -0.4 2,144,231 - EX28DRAFT_2125 0.46 +0.0 2,144,486 + EX28DRAFT_2125 0.88 -0.1 2,144,624 + +0.1 2,144,696 + -0.4 2,144,789 + EX28DRAFT_2126 0.22 -0.0 2,144,789 + EX28DRAFT_2126 0.22 -0.9 2,144,789 + EX28DRAFT_2126 0.22 -1.2 2,144,789 + EX28DRAFT_2126 0.22 +0.9 2,144,790 - EX28DRAFT_2126 0.22 -2.3 2,144,790 - EX28DRAFT_2126 0.22 -1.0 2,144,790 - EX28DRAFT_2126 0.22 -2.3 2,145,179 + EX28DRAFT_2126 0.73 -0.0 2,145,378 + +0.3 2,145,379 - -0.3 2,145,381 + +0.1 2,145,381 + -1.2 2,145,381 + +0.0 2,145,382 - -0.5 2,145,382 - +0.1 2,145,452 + -1.7 2,145,452 + -0.2 2,145,452 + +0.4 2,145,453 - -0.4 2,145,544 + -1.1 2,145,545 - +1.4 2,145,545 - +0.4 2,145,573 + EX28DRAFT_2127 0.10 -0.5 2,145,574 - EX28DRAFT_2127 0.10 +0.1 2,145,653 + EX28DRAFT_2127 0.17 +0.6 2,145,653 + EX28DRAFT_2127 0.17 -0.4 2,145,800 + EX28DRAFT_2127 0.29 +0.3 2,145,922 - EX28DRAFT_2127 0.39 +0.2 2,146,015 - EX28DRAFT_2127 0.47 -0.9 2,146,267 - EX28DRAFT_2127 0.68 -0.8 2,146,270 + EX28DRAFT_2127 0.68 -1.0
Or see this region's nucleotide sequence