Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2101

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2099 and EX28DRAFT_2100 are separated by 351 nucleotidesEX28DRAFT_2100 and EX28DRAFT_2101 are separated by 63 nucleotidesEX28DRAFT_2101 and EX28DRAFT_2102 are separated by 48 nucleotidesEX28DRAFT_2102 and EX28DRAFT_2103 are separated by 184 nucleotides EX28DRAFT_2099: EX28DRAFT_2099 - Spermidine/putrescine-binding periplasmic protein, at 2,122,941 to 2,124,053 _2099 EX28DRAFT_2100: EX28DRAFT_2100 - Putative bacterial sensory transduction regulator, at 2,124,405 to 2,124,881 _2100 EX28DRAFT_2101: EX28DRAFT_2101 - alpha-L-glutamate ligase, RimK family, at 2,124,945 to 2,125,868 _2101 EX28DRAFT_2102: EX28DRAFT_2102 - Nitroreductase, at 2,125,917 to 2,126,639 _2102 EX28DRAFT_2103: EX28DRAFT_2103 - Glutaredoxin, GrxA family, at 2,126,824 to 2,127,093 _2103 Position (kb) 2124 2125 2126Strain fitness (log2 ratio) -1 0 1at 2124.038 kb on + strandat 2124.054 kb on - strandat 2124.060 kb on - strandat 2124.112 kb on + strandat 2124.146 kb on + strandat 2124.208 kb on + strandat 2124.209 kb on - strandat 2124.209 kb on - strandat 2124.277 kb on + strandat 2124.277 kb on + strandat 2124.461 kb on - strand, within EX28DRAFT_2100at 2124.610 kb on - strand, within EX28DRAFT_2100at 2124.774 kb on - strand, within EX28DRAFT_2100at 2124.774 kb on - strand, within EX28DRAFT_2100at 2124.818 kb on + strand, within EX28DRAFT_2100at 2124.846 kb on + strandat 2124.847 kb on - strandat 2124.860 kb on + strandat 2124.861 kb on - strandat 2124.864 kb on + strandat 2124.865 kb on - strandat 2124.901 kb on + strandat 2124.903 kb on + strandat 2124.903 kb on + strandat 2124.903 kb on + strandat 2124.904 kb on - strandat 2124.904 kb on - strandat 2124.904 kb on - strandat 2124.914 kb on + strandat 2124.915 kb on - strandat 2124.915 kb on - strandat 2125.107 kb on + strand, within EX28DRAFT_2101at 2125.176 kb on - strand, within EX28DRAFT_2101at 2125.211 kb on + strand, within EX28DRAFT_2101at 2125.312 kb on + strand, within EX28DRAFT_2101at 2125.312 kb on + strand, within EX28DRAFT_2101at 2125.313 kb on - strand, within EX28DRAFT_2101at 2125.313 kb on - strand, within EX28DRAFT_2101at 2125.568 kb on + strand, within EX28DRAFT_2101at 2125.633 kb on + strand, within EX28DRAFT_2101at 2125.637 kb on - strand, within EX28DRAFT_2101at 2125.734 kb on - strand, within EX28DRAFT_2101at 2125.735 kb on + strand, within EX28DRAFT_2101at 2125.735 kb on + strand, within EX28DRAFT_2101at 2125.735 kb on + strand, within EX28DRAFT_2101at 2125.735 kb on + strand, within EX28DRAFT_2101at 2125.735 kb on + strand, within EX28DRAFT_2101at 2125.736 kb on - strand, within EX28DRAFT_2101at 2125.736 kb on - strand, within EX28DRAFT_2101at 2125.736 kb on - strand, within EX28DRAFT_2101at 2125.834 kb on - strandat 2125.888 kb on + strandat 2125.889 kb on - strandat 2125.891 kb on - strandat 2125.891 kb on - strandat 2125.948 kb on + strandat 2125.948 kb on + strandat 2125.959 kb on - strandat 2126.045 kb on - strand, within EX28DRAFT_2102at 2126.241 kb on - strand, within EX28DRAFT_2102at 2126.257 kb on + strand, within EX28DRAFT_2102at 2126.257 kb on + strand, within EX28DRAFT_2102at 2126.258 kb on - strand, within EX28DRAFT_2102at 2126.546 kb on + strand, within EX28DRAFT_2102at 2126.625 kb on + strandat 2126.682 kb on + strandat 2126.683 kb on - strandat 2126.704 kb on - strandat 2126.704 kb on - strandat 2126.704 kb on - strandat 2126.718 kb on - strandat 2126.718 kb on - strandat 2126.723 kb on + strandat 2126.723 kb on + strandat 2126.723 kb on + strandat 2126.724 kb on - strandat 2126.728 kb on + strandat 2126.779 kb on + strandat 2126.779 kb on + strandat 2126.780 kb on - strandat 2126.780 kb on - strandat 2126.780 kb on - strandat 2126.781 kb on + strandat 2126.781 kb on + strandat 2126.782 kb on - strandat 2126.782 kb on - strandat 2126.782 kb on - strandat 2126.782 kb on - strandat 2126.788 kb on + strandat 2126.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,124,038 + -0.0
2,124,054 - -0.5
2,124,060 - +0.3
2,124,112 + -0.5
2,124,146 + -0.2
2,124,208 + -0.5
2,124,209 - -0.2
2,124,209 - -0.4
2,124,277 + +0.2
2,124,277 + -0.1
2,124,461 - EX28DRAFT_2100 0.12 -1.0
2,124,610 - EX28DRAFT_2100 0.43 +0.3
2,124,774 - EX28DRAFT_2100 0.77 +0.2
2,124,774 - EX28DRAFT_2100 0.77 -1.5
2,124,818 + EX28DRAFT_2100 0.87 +0.1
2,124,846 + -0.5
2,124,847 - +0.8
2,124,860 + -0.4
2,124,861 - -0.2
2,124,864 + -1.1
2,124,865 - -1.4
2,124,901 + -0.0
2,124,903 + -1.1
2,124,903 + -0.4
2,124,903 + +0.2
2,124,904 - +0.0
2,124,904 - +0.6
2,124,904 - -1.6
2,124,914 + +0.3
2,124,915 - -0.2
2,124,915 - -1.1
2,125,107 + EX28DRAFT_2101 0.18 +0.5
2,125,176 - EX28DRAFT_2101 0.25 +0.1
2,125,211 + EX28DRAFT_2101 0.29 -0.2
2,125,312 + EX28DRAFT_2101 0.40 +0.1
2,125,312 + EX28DRAFT_2101 0.40 -0.9
2,125,313 - EX28DRAFT_2101 0.40 -0.2
2,125,313 - EX28DRAFT_2101 0.40 +0.9
2,125,568 + EX28DRAFT_2101 0.67 -0.9
2,125,633 + EX28DRAFT_2101 0.74 +0.5
2,125,637 - EX28DRAFT_2101 0.75 +1.3
2,125,734 - EX28DRAFT_2101 0.85 +0.5
2,125,735 + EX28DRAFT_2101 0.85 +0.7
2,125,735 + EX28DRAFT_2101 0.85 +1.0
2,125,735 + EX28DRAFT_2101 0.85 +0.5
2,125,735 + EX28DRAFT_2101 0.85 -0.2
2,125,735 + EX28DRAFT_2101 0.85 +0.3
2,125,736 - EX28DRAFT_2101 0.86 -0.1
2,125,736 - EX28DRAFT_2101 0.86 -0.0
2,125,736 - EX28DRAFT_2101 0.86 -0.0
2,125,834 - -0.1
2,125,888 + -0.5
2,125,889 - -0.3
2,125,891 - -0.0
2,125,891 - +0.8
2,125,948 + +0.5
2,125,948 + +0.0
2,125,959 - +0.7
2,126,045 - EX28DRAFT_2102 0.18 +0.1
2,126,241 - EX28DRAFT_2102 0.45 +0.2
2,126,257 + EX28DRAFT_2102 0.47 +0.9
2,126,257 + EX28DRAFT_2102 0.47 -1.3
2,126,258 - EX28DRAFT_2102 0.47 +0.2
2,126,546 + EX28DRAFT_2102 0.87 -0.1
2,126,625 + +0.1
2,126,682 + +0.0
2,126,683 - +0.4
2,126,704 - -0.2
2,126,704 - -0.8
2,126,704 - -0.6
2,126,718 - -0.6
2,126,718 - -0.1
2,126,723 + +0.6
2,126,723 + -0.2
2,126,723 + +0.2
2,126,724 - -0.7
2,126,728 + +0.1
2,126,779 + -0.8
2,126,779 + +0.1
2,126,780 - -0.4
2,126,780 - -0.4
2,126,780 - -0.9
2,126,781 + +0.2
2,126,781 + +0.2
2,126,782 - +0.7
2,126,782 - -1.6
2,126,782 - +0.1
2,126,782 - -1.4
2,126,788 + -0.4
2,126,789 - +0.0

Or see this region's nucleotide sequence