Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2042

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2040 and EX28DRAFT_2041 are separated by 9 nucleotidesEX28DRAFT_2041 and EX28DRAFT_2042 are separated by 128 nucleotidesEX28DRAFT_2042 and EX28DRAFT_2043 are separated by 135 nucleotides EX28DRAFT_2040: EX28DRAFT_2040 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 2,056,477 to 2,057,820 _2040 EX28DRAFT_2041: EX28DRAFT_2041 - periplasmic chaperone LolA, at 2,057,830 to 2,058,444 _2041 EX28DRAFT_2042: EX28DRAFT_2042 - DNA segregation ATPase FtsK/SpoIIIE and related proteins, at 2,058,573 to 2,062,274 _2042 EX28DRAFT_2043: EX28DRAFT_2043 - transcriptional regulator, AsnC family, at 2,062,410 to 2,062,904 _2043 Position (kb) 2058 2059 2060 2061 2062 2063Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2057.706 kb on + strandat 2057.739 kb on - strandat 2057.832 kb on - strandat 2057.832 kb on - strandat 2057.835 kb on + strandat 2057.836 kb on - strandat 2058.461 kb on - strandat 2058.492 kb on - strandat 2062.385 kb on - strandat 2062.421 kb on + strandat 2062.422 kb on - strandat 2062.422 kb on - strandat 2062.422 kb on - strandat 2062.465 kb on + strand, within EX28DRAFT_2043at 2062.465 kb on + strand, within EX28DRAFT_2043at 2062.465 kb on + strand, within EX28DRAFT_2043at 2062.466 kb on - strand, within EX28DRAFT_2043at 2062.466 kb on - strand, within EX28DRAFT_2043at 2062.466 kb on - strand, within EX28DRAFT_2043at 2062.466 kb on - strand, within EX28DRAFT_2043at 2062.665 kb on - strand, within EX28DRAFT_2043at 2062.721 kb on + strand, within EX28DRAFT_2043at 2062.721 kb on + strand, within EX28DRAFT_2043at 2062.722 kb on - strand, within EX28DRAFT_2043at 2062.724 kb on - strand, within EX28DRAFT_2043at 2062.854 kb on - strand, within EX28DRAFT_2043at 2062.896 kb on - strandat 2062.900 kb on - strandat 2062.900 kb on - strandat 2062.922 kb on - strandat 2063.006 kb on - strandat 2063.039 kb on - strandat 2063.077 kb on + strandat 2063.077 kb on + strandat 2063.078 kb on - strandat 2063.102 kb on - strandat 2063.102 kb on - strandat 2063.145 kb on - strandat 2063.154 kb on - strandat 2063.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,057,706 + -0.3
2,057,739 - +0.2
2,057,832 - +0.1
2,057,832 - -0.3
2,057,835 + -1.5
2,057,836 - -3.0
2,058,461 - +0.2
2,058,492 - -0.3
2,062,385 - +0.3
2,062,421 + -0.6
2,062,422 - +0.4
2,062,422 - +0.8
2,062,422 - +0.5
2,062,465 + EX28DRAFT_2043 0.11 -2.1
2,062,465 + EX28DRAFT_2043 0.11 -3.0
2,062,465 + EX28DRAFT_2043 0.11 -4.8
2,062,466 - EX28DRAFT_2043 0.11 -0.8
2,062,466 - EX28DRAFT_2043 0.11 -1.1
2,062,466 - EX28DRAFT_2043 0.11 -2.2
2,062,466 - EX28DRAFT_2043 0.11 -1.3
2,062,665 - EX28DRAFT_2043 0.52 -2.7
2,062,721 + EX28DRAFT_2043 0.63 -3.0
2,062,721 + EX28DRAFT_2043 0.63 -2.9
2,062,722 - EX28DRAFT_2043 0.63 -1.0
2,062,724 - EX28DRAFT_2043 0.63 -2.6
2,062,854 - EX28DRAFT_2043 0.90 -0.9
2,062,896 - +1.8
2,062,900 - -2.6
2,062,900 - +1.5
2,062,922 - +0.1
2,063,006 - -0.6
2,063,039 - -0.5
2,063,077 + -0.8
2,063,077 + +0.5
2,063,078 - +2.0
2,063,102 - +1.1
2,063,102 - +0.8
2,063,145 - +0.5
2,063,154 - +1.1
2,063,270 - -0.4

Or see this region's nucleotide sequence