Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2032

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2031 and EX28DRAFT_2032 are separated by 51 nucleotidesEX28DRAFT_2032 and EX28DRAFT_2033 are separated by 204 nucleotidesEX28DRAFT_2033 and EX28DRAFT_2034 are separated by 36 nucleotides EX28DRAFT_2031: EX28DRAFT_2031 - formate transporter FocA, at 2,044,418 to 2,045,558 _2031 EX28DRAFT_2032: EX28DRAFT_2032 - formate acetyltransferase 1, at 2,045,610 to 2,047,892 _2032 EX28DRAFT_2033: EX28DRAFT_2033 - pyruvate formate-lyase 1-activating enzyme, at 2,048,097 to 2,048,837 _2033 EX28DRAFT_2034: EX28DRAFT_2034 - hypothetical protein, at 2,048,874 to 2,049,395 _2034 Position (kb) 2045 2046 2047 2048Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2044.611 kb on - strand, within EX28DRAFT_2031at 2044.612 kb on + strand, within EX28DRAFT_2031at 2044.612 kb on + strand, within EX28DRAFT_2031at 2044.650 kb on + strand, within EX28DRAFT_2031at 2044.683 kb on - strand, within EX28DRAFT_2031at 2044.806 kb on + strand, within EX28DRAFT_2031at 2044.807 kb on - strand, within EX28DRAFT_2031at 2044.854 kb on + strand, within EX28DRAFT_2031at 2045.113 kb on - strand, within EX28DRAFT_2031at 2045.184 kb on - strand, within EX28DRAFT_2031at 2045.248 kb on - strand, within EX28DRAFT_2031at 2045.278 kb on + strand, within EX28DRAFT_2031at 2045.438 kb on + strand, within EX28DRAFT_2031at 2045.441 kb on + strand, within EX28DRAFT_2031at 2045.454 kb on - strandat 2045.506 kb on + strandat 2045.507 kb on - strandat 2045.520 kb on + strandat 2045.520 kb on + strandat 2045.521 kb on - strandat 2045.592 kb on + strandat 2045.592 kb on + strandat 2045.600 kb on + strandat 2045.601 kb on - strandat 2045.607 kb on + strandat 2045.608 kb on - strandat 2045.608 kb on - strandat 2045.608 kb on - strandat 2045.680 kb on + strandat 2045.681 kb on - strandat 2045.686 kb on + strandat 2045.686 kb on + strandat 2045.710 kb on - strandat 2045.874 kb on + strand, within EX28DRAFT_2032at 2045.957 kb on + strand, within EX28DRAFT_2032at 2046.140 kb on + strand, within EX28DRAFT_2032at 2046.171 kb on + strand, within EX28DRAFT_2032at 2046.202 kb on - strand, within EX28DRAFT_2032at 2046.387 kb on + strand, within EX28DRAFT_2032at 2046.388 kb on - strand, within EX28DRAFT_2032at 2046.693 kb on + strand, within EX28DRAFT_2032at 2046.992 kb on + strand, within EX28DRAFT_2032at 2047.047 kb on - strand, within EX28DRAFT_2032at 2047.107 kb on + strand, within EX28DRAFT_2032at 2047.354 kb on + strand, within EX28DRAFT_2032at 2047.355 kb on - strand, within EX28DRAFT_2032at 2047.388 kb on + strand, within EX28DRAFT_2032at 2047.446 kb on + strand, within EX28DRAFT_2032at 2047.447 kb on - strand, within EX28DRAFT_2032at 2047.512 kb on - strand, within EX28DRAFT_2032at 2047.598 kb on + strand, within EX28DRAFT_2032at 2047.605 kb on + strand, within EX28DRAFT_2032at 2047.605 kb on + strand, within EX28DRAFT_2032at 2047.655 kb on + strand, within EX28DRAFT_2032at 2047.686 kb on + strandat 2047.686 kb on + strandat 2047.686 kb on + strandat 2047.829 kb on + strandat 2047.871 kb on + strandat 2047.872 kb on - strandat 2047.890 kb on + strandat 2047.891 kb on - strandat 2047.997 kb on + strandat 2047.997 kb on + strandat 2047.997 kb on + strandat 2047.997 kb on + strandat 2047.997 kb on + strandat 2047.998 kb on - strandat 2047.998 kb on - strandat 2047.998 kb on - strandat 2047.998 kb on - strandat 2047.999 kb on + strandat 2047.999 kb on + strandat 2048.000 kb on - strandat 2048.004 kb on + strandat 2048.399 kb on + strand, within EX28DRAFT_2033at 2048.400 kb on - strand, within EX28DRAFT_2033at 2048.425 kb on + strand, within EX28DRAFT_2033at 2048.563 kb on - strand, within EX28DRAFT_2033at 2048.720 kb on + strand, within EX28DRAFT_2033at 2048.746 kb on - strand, within EX28DRAFT_2033at 2048.806 kb on + strandat 2048.806 kb on + strandat 2048.806 kb on + strandat 2048.807 kb on - strandat 2048.807 kb on - strandat 2048.815 kb on - strandat 2048.832 kb on + strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.836 kb on - strandat 2048.869 kb on - strandat 2048.869 kb on - strandat 2048.870 kb on + strandat 2048.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,044,611 - EX28DRAFT_2031 0.17 +0.2
2,044,612 + EX28DRAFT_2031 0.17 -0.0
2,044,612 + EX28DRAFT_2031 0.17 +0.3
2,044,650 + EX28DRAFT_2031 0.20 +0.4
2,044,683 - EX28DRAFT_2031 0.23 +0.1
2,044,806 + EX28DRAFT_2031 0.34 +1.4
2,044,807 - EX28DRAFT_2031 0.34 -2.0
2,044,854 + EX28DRAFT_2031 0.38 -0.3
2,045,113 - EX28DRAFT_2031 0.61 +1.3
2,045,184 - EX28DRAFT_2031 0.67 +1.1
2,045,248 - EX28DRAFT_2031 0.73 +0.8
2,045,278 + EX28DRAFT_2031 0.75 -0.0
2,045,438 + EX28DRAFT_2031 0.89 +0.4
2,045,441 + EX28DRAFT_2031 0.90 +0.5
2,045,454 - +0.2
2,045,506 + +0.4
2,045,507 - -0.0
2,045,520 + +1.0
2,045,520 + +0.5
2,045,521 - +2.5
2,045,592 + +0.4
2,045,592 + +0.6
2,045,600 + +0.2
2,045,601 - +0.7
2,045,607 + -0.1
2,045,608 - -0.8
2,045,608 - +0.6
2,045,608 - +0.9
2,045,680 + +1.2
2,045,681 - +0.3
2,045,686 + +1.6
2,045,686 + +0.6
2,045,710 - +0.5
2,045,874 + EX28DRAFT_2032 0.12 +0.7
2,045,957 + EX28DRAFT_2032 0.15 -0.0
2,046,140 + EX28DRAFT_2032 0.23 -1.5
2,046,171 + EX28DRAFT_2032 0.25 -0.5
2,046,202 - EX28DRAFT_2032 0.26 +0.0
2,046,387 + EX28DRAFT_2032 0.34 +1.0
2,046,388 - EX28DRAFT_2032 0.34 +0.7
2,046,693 + EX28DRAFT_2032 0.47 +1.8
2,046,992 + EX28DRAFT_2032 0.61 +0.7
2,047,047 - EX28DRAFT_2032 0.63 -1.3
2,047,107 + EX28DRAFT_2032 0.66 -0.5
2,047,354 + EX28DRAFT_2032 0.76 +0.3
2,047,355 - EX28DRAFT_2032 0.76 -0.1
2,047,388 + EX28DRAFT_2032 0.78 +0.3
2,047,446 + EX28DRAFT_2032 0.80 +0.3
2,047,447 - EX28DRAFT_2032 0.80 +0.0
2,047,512 - EX28DRAFT_2032 0.83 -0.1
2,047,598 + EX28DRAFT_2032 0.87 -0.2
2,047,605 + EX28DRAFT_2032 0.87 +0.3
2,047,605 + EX28DRAFT_2032 0.87 +0.5
2,047,655 + EX28DRAFT_2032 0.90 +0.2
2,047,686 + +0.2
2,047,686 + +0.7
2,047,686 + +0.7
2,047,829 + +0.7
2,047,871 + +1.1
2,047,872 - -1.1
2,047,890 + -2.5
2,047,891 - +0.1
2,047,997 + +0.4
2,047,997 + +0.3
2,047,997 + +0.6
2,047,997 + +0.4
2,047,997 + +0.3
2,047,998 - -0.8
2,047,998 - +0.0
2,047,998 - +0.4
2,047,998 - +0.4
2,047,999 + -1.3
2,047,999 + +1.5
2,048,000 - +0.8
2,048,004 + +0.8
2,048,399 + EX28DRAFT_2033 0.41 +0.4
2,048,400 - EX28DRAFT_2033 0.41 +3.0
2,048,425 + EX28DRAFT_2033 0.44 +0.2
2,048,563 - EX28DRAFT_2033 0.63 +1.5
2,048,720 + EX28DRAFT_2033 0.84 +0.4
2,048,746 - EX28DRAFT_2033 0.88 +0.1
2,048,806 + +0.1
2,048,806 + +0.0
2,048,806 + -0.2
2,048,807 - -0.6
2,048,807 - +1.4
2,048,815 - +0.7
2,048,832 + -0.2
2,048,833 - +0.3
2,048,833 - -3.3
2,048,833 - -0.7
2,048,833 - +0.8
2,048,833 - -0.8
2,048,836 - -0.7
2,048,869 - +0.3
2,048,869 - +0.9
2,048,870 + -2.0
2,048,875 + -0.4

Or see this region's nucleotide sequence