Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2031

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2030 and EX28DRAFT_2031 are separated by 123 nucleotidesEX28DRAFT_2031 and EX28DRAFT_2032 are separated by 51 nucleotides EX28DRAFT_2030: EX28DRAFT_2030 - YcaO-type kinase domain, at 2,042,534 to 2,044,294 _2030 EX28DRAFT_2031: EX28DRAFT_2031 - formate transporter FocA, at 2,044,418 to 2,045,558 _2031 EX28DRAFT_2032: EX28DRAFT_2032 - formate acetyltransferase 1, at 2,045,610 to 2,047,892 _2032 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -2 -1 0 1 2at 2043.481 kb on + strand, within EX28DRAFT_2030at 2043.482 kb on - strand, within EX28DRAFT_2030at 2043.533 kb on - strand, within EX28DRAFT_2030at 2043.533 kb on - strand, within EX28DRAFT_2030at 2043.644 kb on + strand, within EX28DRAFT_2030at 2043.644 kb on + strand, within EX28DRAFT_2030at 2043.688 kb on + strand, within EX28DRAFT_2030at 2043.714 kb on - strand, within EX28DRAFT_2030at 2043.742 kb on + strand, within EX28DRAFT_2030at 2043.860 kb on - strand, within EX28DRAFT_2030at 2043.877 kb on - strand, within EX28DRAFT_2030at 2043.911 kb on + strand, within EX28DRAFT_2030at 2043.913 kb on + strand, within EX28DRAFT_2030at 2044.040 kb on + strand, within EX28DRAFT_2030at 2044.041 kb on - strand, within EX28DRAFT_2030at 2044.041 kb on - strand, within EX28DRAFT_2030at 2044.103 kb on + strand, within EX28DRAFT_2030at 2044.123 kb on + strandat 2044.123 kb on + strandat 2044.302 kb on + strandat 2044.324 kb on - strandat 2044.341 kb on - strandat 2044.342 kb on + strandat 2044.428 kb on - strandat 2044.450 kb on + strandat 2044.468 kb on + strandat 2044.483 kb on - strandat 2044.483 kb on - strandat 2044.611 kb on - strand, within EX28DRAFT_2031at 2044.612 kb on + strand, within EX28DRAFT_2031at 2044.612 kb on + strand, within EX28DRAFT_2031at 2044.650 kb on + strand, within EX28DRAFT_2031at 2044.683 kb on - strand, within EX28DRAFT_2031at 2044.806 kb on + strand, within EX28DRAFT_2031at 2044.807 kb on - strand, within EX28DRAFT_2031at 2044.854 kb on + strand, within EX28DRAFT_2031at 2045.113 kb on - strand, within EX28DRAFT_2031at 2045.184 kb on - strand, within EX28DRAFT_2031at 2045.248 kb on - strand, within EX28DRAFT_2031at 2045.278 kb on + strand, within EX28DRAFT_2031at 2045.438 kb on + strand, within EX28DRAFT_2031at 2045.441 kb on + strand, within EX28DRAFT_2031at 2045.454 kb on - strandat 2045.506 kb on + strandat 2045.507 kb on - strandat 2045.520 kb on + strandat 2045.520 kb on + strandat 2045.521 kb on - strandat 2045.592 kb on + strandat 2045.592 kb on + strandat 2045.600 kb on + strandat 2045.601 kb on - strandat 2045.607 kb on + strandat 2045.608 kb on - strandat 2045.608 kb on - strandat 2045.608 kb on - strandat 2045.680 kb on + strandat 2045.681 kb on - strandat 2045.686 kb on + strandat 2045.686 kb on + strandat 2045.710 kb on - strandat 2045.874 kb on + strand, within EX28DRAFT_2032at 2045.957 kb on + strand, within EX28DRAFT_2032at 2046.140 kb on + strand, within EX28DRAFT_2032at 2046.171 kb on + strand, within EX28DRAFT_2032at 2046.202 kb on - strand, within EX28DRAFT_2032at 2046.387 kb on + strand, within EX28DRAFT_2032at 2046.388 kb on - strand, within EX28DRAFT_2032

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,043,481 + EX28DRAFT_2030 0.54 -0.7
2,043,482 - EX28DRAFT_2030 0.54 +0.1
2,043,533 - EX28DRAFT_2030 0.57 -0.5
2,043,533 - EX28DRAFT_2030 0.57 -1.5
2,043,644 + EX28DRAFT_2030 0.63 +1.4
2,043,644 + EX28DRAFT_2030 0.63 -0.1
2,043,688 + EX28DRAFT_2030 0.66 -0.0
2,043,714 - EX28DRAFT_2030 0.67 +0.8
2,043,742 + EX28DRAFT_2030 0.69 +0.3
2,043,860 - EX28DRAFT_2030 0.75 -0.1
2,043,877 - EX28DRAFT_2030 0.76 +0.3
2,043,911 + EX28DRAFT_2030 0.78 +1.3
2,043,913 + EX28DRAFT_2030 0.78 +0.5
2,044,040 + EX28DRAFT_2030 0.86 -0.5
2,044,041 - EX28DRAFT_2030 0.86 -0.1
2,044,041 - EX28DRAFT_2030 0.86 -0.3
2,044,103 + EX28DRAFT_2030 0.89 +0.8
2,044,123 + +0.6
2,044,123 + +0.7
2,044,302 + -0.4
2,044,324 - +0.3
2,044,341 - -0.5
2,044,342 + -0.4
2,044,428 - -0.2
2,044,450 + -1.2
2,044,468 + +0.4
2,044,483 - +0.1
2,044,483 - +0.4
2,044,611 - EX28DRAFT_2031 0.17 +0.2
2,044,612 + EX28DRAFT_2031 0.17 -0.0
2,044,612 + EX28DRAFT_2031 0.17 +0.3
2,044,650 + EX28DRAFT_2031 0.20 +0.4
2,044,683 - EX28DRAFT_2031 0.23 +0.1
2,044,806 + EX28DRAFT_2031 0.34 +1.4
2,044,807 - EX28DRAFT_2031 0.34 -2.0
2,044,854 + EX28DRAFT_2031 0.38 -0.3
2,045,113 - EX28DRAFT_2031 0.61 +1.3
2,045,184 - EX28DRAFT_2031 0.67 +1.1
2,045,248 - EX28DRAFT_2031 0.73 +0.8
2,045,278 + EX28DRAFT_2031 0.75 -0.0
2,045,438 + EX28DRAFT_2031 0.89 +0.4
2,045,441 + EX28DRAFT_2031 0.90 +0.5
2,045,454 - +0.2
2,045,506 + +0.4
2,045,507 - -0.0
2,045,520 + +1.0
2,045,520 + +0.5
2,045,521 - +2.5
2,045,592 + +0.4
2,045,592 + +0.6
2,045,600 + +0.2
2,045,601 - +0.7
2,045,607 + -0.1
2,045,608 - -0.8
2,045,608 - +0.6
2,045,608 - +0.9
2,045,680 + +1.2
2,045,681 - +0.3
2,045,686 + +1.6
2,045,686 + +0.6
2,045,710 - +0.5
2,045,874 + EX28DRAFT_2032 0.12 +0.7
2,045,957 + EX28DRAFT_2032 0.15 -0.0
2,046,140 + EX28DRAFT_2032 0.23 -1.5
2,046,171 + EX28DRAFT_2032 0.25 -0.5
2,046,202 - EX28DRAFT_2032 0.26 +0.0
2,046,387 + EX28DRAFT_2032 0.34 +1.0
2,046,388 - EX28DRAFT_2032 0.34 +0.7

Or see this region's nucleotide sequence