Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1955 and EX28DRAFT_1956 overlap by 4 nucleotides EX28DRAFT_1956 and EX28DRAFT_1957 are separated by 9 nucleotides
EX28DRAFT_1955: EX28DRAFT_1955 - hypothetical protein, at 1,959,442 to 1,960,599
_1955
EX28DRAFT_1956: EX28DRAFT_1956 - hypothetical protein, at 1,960,596 to 1,960,718
_1956
EX28DRAFT_1957: EX28DRAFT_1957 - Predicted membrane protein involved in D-alanine export, at 1,960,728 to 1,961,846
_1957
Position (kb)
1960
1961 Strain fitness (log2 ratio)
-1
0
1
2 at 1959.645 kb on - strand, within EX28DRAFT_1955 at 1959.706 kb on + strand, within EX28DRAFT_1955 at 1959.706 kb on + strand, within EX28DRAFT_1955 at 1959.707 kb on - strand, within EX28DRAFT_1955 at 1959.713 kb on + strand, within EX28DRAFT_1955 at 1959.713 kb on + strand, within EX28DRAFT_1955 at 1959.715 kb on + strand, within EX28DRAFT_1955 at 1959.716 kb on - strand, within EX28DRAFT_1955 at 1959.716 kb on - strand, within EX28DRAFT_1955 at 1959.716 kb on - strand, within EX28DRAFT_1955 at 1959.717 kb on + strand, within EX28DRAFT_1955 at 1959.895 kb on + strand, within EX28DRAFT_1955 at 1959.895 kb on + strand, within EX28DRAFT_1955 at 1959.895 kb on + strand, within EX28DRAFT_1955 at 1959.896 kb on - strand, within EX28DRAFT_1955 at 1959.967 kb on - strand, within EX28DRAFT_1955 at 1959.971 kb on - strand, within EX28DRAFT_1955 at 1959.975 kb on - strand, within EX28DRAFT_1955 at 1959.982 kb on - strand, within EX28DRAFT_1955 at 1959.987 kb on + strand, within EX28DRAFT_1955 at 1959.990 kb on + strand, within EX28DRAFT_1955 at 1960.418 kb on - strand, within EX28DRAFT_1955 at 1960.418 kb on - strand, within EX28DRAFT_1955 at 1960.422 kb on + strand, within EX28DRAFT_1955 at 1960.490 kb on + strand at 1960.490 kb on + strand at 1960.491 kb on - strand at 1960.494 kb on + strand at 1960.495 kb on - strand at 1960.495 kb on - strand at 1960.495 kb on - strand at 1960.498 kb on + strand at 1960.498 kb on + strand at 1960.499 kb on - strand at 1960.566 kb on + strand at 1960.686 kb on - strand, within EX28DRAFT_1956 at 1960.731 kb on + strand at 1960.731 kb on + strand at 1960.732 kb on - strand at 1960.801 kb on + strand at 1960.861 kb on - strand, within EX28DRAFT_1957 at 1960.862 kb on + strand, within EX28DRAFT_1957 at 1960.862 kb on + strand, within EX28DRAFT_1957 at 1960.863 kb on - strand, within EX28DRAFT_1957 at 1960.863 kb on - strand, within EX28DRAFT_1957 at 1960.863 kb on - strand, within EX28DRAFT_1957 at 1960.864 kb on + strand, within EX28DRAFT_1957 at 1960.865 kb on - strand, within EX28DRAFT_1957 at 1960.879 kb on - strand, within EX28DRAFT_1957 at 1960.880 kb on + strand, within EX28DRAFT_1957 at 1960.911 kb on + strand, within EX28DRAFT_1957 at 1960.928 kb on - strand, within EX28DRAFT_1957 at 1960.928 kb on - strand, within EX28DRAFT_1957 at 1960.945 kb on + strand, within EX28DRAFT_1957 at 1960.999 kb on + strand, within EX28DRAFT_1957 at 1961.005 kb on + strand, within EX28DRAFT_1957 at 1961.133 kb on - strand, within EX28DRAFT_1957 at 1961.136 kb on - strand, within EX28DRAFT_1957 at 1961.364 kb on + strand, within EX28DRAFT_1957 at 1961.370 kb on + strand, within EX28DRAFT_1957 at 1961.370 kb on + strand, within EX28DRAFT_1957 at 1961.370 kb on + strand, within EX28DRAFT_1957 at 1961.371 kb on - strand, within EX28DRAFT_1957 at 1961.371 kb on - strand, within EX28DRAFT_1957 at 1961.397 kb on - strand, within EX28DRAFT_1957 at 1961.432 kb on + strand, within EX28DRAFT_1957 at 1961.544 kb on + strand, within EX28DRAFT_1957 at 1961.546 kb on + strand, within EX28DRAFT_1957 at 1961.600 kb on + strand, within EX28DRAFT_1957 at 1961.620 kb on + strand, within EX28DRAFT_1957 at 1961.658 kb on + strand, within EX28DRAFT_1957 at 1961.705 kb on + strand, within EX28DRAFT_1957 at 1961.705 kb on + strand, within EX28DRAFT_1957 at 1961.705 kb on + strand, within EX28DRAFT_1957
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,959,645 - EX28DRAFT_1955 0.18 +0.1 1,959,706 + EX28DRAFT_1955 0.23 +0.9 1,959,706 + EX28DRAFT_1955 0.23 +0.1 1,959,707 - EX28DRAFT_1955 0.23 +0.8 1,959,713 + EX28DRAFT_1955 0.23 -1.1 1,959,713 + EX28DRAFT_1955 0.23 -0.1 1,959,715 + EX28DRAFT_1955 0.24 +0.5 1,959,716 - EX28DRAFT_1955 0.24 -0.2 1,959,716 - EX28DRAFT_1955 0.24 -0.1 1,959,716 - EX28DRAFT_1955 0.24 +1.0 1,959,717 + EX28DRAFT_1955 0.24 -1.1 1,959,895 + EX28DRAFT_1955 0.39 -0.4 1,959,895 + EX28DRAFT_1955 0.39 -0.0 1,959,895 + EX28DRAFT_1955 0.39 -0.0 1,959,896 - EX28DRAFT_1955 0.39 -1.0 1,959,967 - EX28DRAFT_1955 0.45 +0.0 1,959,971 - EX28DRAFT_1955 0.46 +0.2 1,959,975 - EX28DRAFT_1955 0.46 +0.1 1,959,982 - EX28DRAFT_1955 0.47 -1.1 1,959,987 + EX28DRAFT_1955 0.47 -0.2 1,959,990 + EX28DRAFT_1955 0.47 +0.3 1,960,418 - EX28DRAFT_1955 0.84 -0.8 1,960,418 - EX28DRAFT_1955 0.84 -0.4 1,960,422 + EX28DRAFT_1955 0.85 -0.2 1,960,490 + +0.6 1,960,490 + +0.7 1,960,491 - -0.8 1,960,494 + +0.2 1,960,495 - +0.3 1,960,495 - +0.2 1,960,495 - -0.4 1,960,498 + -0.7 1,960,498 + -0.3 1,960,499 - -0.1 1,960,566 + -0.9 1,960,686 - EX28DRAFT_1956 0.73 -0.8 1,960,731 + -1.0 1,960,731 + -0.9 1,960,732 - +0.0 1,960,801 + -1.3 1,960,861 - EX28DRAFT_1957 0.12 +0.1 1,960,862 + EX28DRAFT_1957 0.12 -0.3 1,960,862 + EX28DRAFT_1957 0.12 +0.2 1,960,863 - EX28DRAFT_1957 0.12 -0.8 1,960,863 - EX28DRAFT_1957 0.12 +2.1 1,960,863 - EX28DRAFT_1957 0.12 -0.3 1,960,864 + EX28DRAFT_1957 0.12 +0.4 1,960,865 - EX28DRAFT_1957 0.12 -0.3 1,960,879 - EX28DRAFT_1957 0.13 +0.3 1,960,880 + EX28DRAFT_1957 0.14 +0.3 1,960,911 + EX28DRAFT_1957 0.16 +0.3 1,960,928 - EX28DRAFT_1957 0.18 +0.2 1,960,928 - EX28DRAFT_1957 0.18 +0.6 1,960,945 + EX28DRAFT_1957 0.19 +0.6 1,960,999 + EX28DRAFT_1957 0.24 -0.1 1,961,005 + EX28DRAFT_1957 0.25 +0.0 1,961,133 - EX28DRAFT_1957 0.36 +1.0 1,961,136 - EX28DRAFT_1957 0.36 -0.3 1,961,364 + EX28DRAFT_1957 0.57 -0.9 1,961,370 + EX28DRAFT_1957 0.57 +0.0 1,961,370 + EX28DRAFT_1957 0.57 -1.4 1,961,370 + EX28DRAFT_1957 0.57 -0.1 1,961,371 - EX28DRAFT_1957 0.57 -0.7 1,961,371 - EX28DRAFT_1957 0.57 +0.3 1,961,397 - EX28DRAFT_1957 0.60 +0.3 1,961,432 + EX28DRAFT_1957 0.63 -0.1 1,961,544 + EX28DRAFT_1957 0.73 -1.0 1,961,546 + EX28DRAFT_1957 0.73 -0.2 1,961,600 + EX28DRAFT_1957 0.78 -0.3 1,961,620 + EX28DRAFT_1957 0.80 +0.2 1,961,658 + EX28DRAFT_1957 0.83 +0.6 1,961,705 + EX28DRAFT_1957 0.87 -0.3 1,961,705 + EX28DRAFT_1957 0.87 +0.8 1,961,705 + EX28DRAFT_1957 0.87 -0.2
Or see this region's nucleotide sequence