Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1913

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1911 and EX28DRAFT_1912 are separated by 87 nucleotidesEX28DRAFT_1912 and EX28DRAFT_1913 overlap by 4 nucleotidesEX28DRAFT_1913 and EX28DRAFT_1914 are separated by 245 nucleotides EX28DRAFT_1911: EX28DRAFT_1911 - L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 1,920,175 to 1,924,137 _1911 EX28DRAFT_1912: EX28DRAFT_1912 - Uncharacterized protein conserved in bacteria, at 1,924,225 to 1,924,584 _1912 EX28DRAFT_1913: EX28DRAFT_1913 - transcriptional regulator, TetR family, at 1,924,581 to 1,925,219 _1913 EX28DRAFT_1914: EX28DRAFT_1914 - pyrimidine utilization protein A, at 1,925,465 to 1,926,556 _1914 Position (kb) 1924 1925 1926Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1923.947 kb on - strandat 1923.947 kb on - strandat 1924.066 kb on + strandat 1924.066 kb on + strandat 1924.130 kb on + strandat 1924.131 kb on - strandat 1924.146 kb on + strandat 1924.149 kb on + strandat 1924.171 kb on + strandat 1924.188 kb on + strandat 1924.188 kb on + strandat 1924.189 kb on - strandat 1924.189 kb on - strandat 1924.189 kb on - strandat 1924.224 kb on - strandat 1924.284 kb on + strand, within EX28DRAFT_1912at 1924.284 kb on + strand, within EX28DRAFT_1912at 1924.284 kb on + strand, within EX28DRAFT_1912at 1924.556 kb on + strandat 1924.664 kb on + strand, within EX28DRAFT_1913at 1924.665 kb on - strand, within EX28DRAFT_1913at 1924.703 kb on - strand, within EX28DRAFT_1913at 1924.931 kb on - strand, within EX28DRAFT_1913at 1925.023 kb on + strand, within EX28DRAFT_1913at 1925.023 kb on + strand, within EX28DRAFT_1913at 1925.024 kb on - strand, within EX28DRAFT_1913at 1925.045 kb on - strand, within EX28DRAFT_1913at 1925.047 kb on + strand, within EX28DRAFT_1913at 1925.189 kb on + strandat 1925.384 kb on - strandat 1925.446 kb on + strandat 1925.446 kb on + strandat 1925.447 kb on - strandat 1925.478 kb on + strandat 1925.479 kb on - strandat 1925.531 kb on + strandat 1925.532 kb on - strandat 1925.554 kb on + strandat 1925.714 kb on + strand, within EX28DRAFT_1914at 1925.715 kb on - strand, within EX28DRAFT_1914at 1925.837 kb on + strand, within EX28DRAFT_1914at 1925.904 kb on - strand, within EX28DRAFT_1914at 1925.904 kb on - strand, within EX28DRAFT_1914at 1926.176 kb on + strand, within EX28DRAFT_1914at 1926.176 kb on + strand, within EX28DRAFT_1914

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,923,947 - -0.9
1,923,947 - -1.3
1,924,066 + +0.2
1,924,066 + -0.1
1,924,130 + -0.3
1,924,131 - +0.1
1,924,146 + +0.6
1,924,149 + +0.6
1,924,171 + -1.7
1,924,188 + +0.4
1,924,188 + -1.7
1,924,189 - -0.0
1,924,189 - -0.5
1,924,189 - -1.2
1,924,224 - +0.3
1,924,284 + EX28DRAFT_1912 0.16 +0.1
1,924,284 + EX28DRAFT_1912 0.16 -0.1
1,924,284 + EX28DRAFT_1912 0.16 -1.3
1,924,556 + +0.3
1,924,664 + EX28DRAFT_1913 0.13 -0.2
1,924,665 - EX28DRAFT_1913 0.13 +0.8
1,924,703 - EX28DRAFT_1913 0.19 +0.6
1,924,931 - EX28DRAFT_1913 0.55 +0.3
1,925,023 + EX28DRAFT_1913 0.69 -0.5
1,925,023 + EX28DRAFT_1913 0.69 -0.0
1,925,024 - EX28DRAFT_1913 0.69 +1.6
1,925,045 - EX28DRAFT_1913 0.73 +1.6
1,925,047 + EX28DRAFT_1913 0.73 +0.5
1,925,189 + -0.2
1,925,384 - -0.5
1,925,446 + -0.3
1,925,446 + -0.4
1,925,447 - -0.1
1,925,478 + -0.9
1,925,479 - +2.4
1,925,531 + +1.1
1,925,532 - +0.1
1,925,554 + -0.6
1,925,714 + EX28DRAFT_1914 0.23 +0.2
1,925,715 - EX28DRAFT_1914 0.23 -0.9
1,925,837 + EX28DRAFT_1914 0.34 -0.6
1,925,904 - EX28DRAFT_1914 0.40 -0.0
1,925,904 - EX28DRAFT_1914 0.40 -2.9
1,926,176 + EX28DRAFT_1914 0.65 +0.4
1,926,176 + EX28DRAFT_1914 0.65 -1.7

Or see this region's nucleotide sequence