Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1889 and EX28DRAFT_1890 are separated by 4 nucleotides EX28DRAFT_1890 and EX28DRAFT_1891 are separated by 23 nucleotides EX28DRAFT_1891 and EX28DRAFT_1892 are separated by 26 nucleotides
EX28DRAFT_1889: EX28DRAFT_1889 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,900,804 to 1,901,454
_1889
EX28DRAFT_1890: EX28DRAFT_1890 - Curli assembly protein CsgE, at 1,901,459 to 1,901,848
_1890
EX28DRAFT_1891: EX28DRAFT_1891 - Type VIII secretion system (T8SS), CsgF protein, at 1,901,872 to 1,902,285
_1891
EX28DRAFT_1892: EX28DRAFT_1892 - Uncharacterized protein involved in formation of curli polymers, at 1,902,312 to 1,903,145
_1892
Position (kb)
1901
1902 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1900.757 kb on - strand at 1900.807 kb on + strand at 1900.808 kb on - strand at 1900.996 kb on - strand, within EX28DRAFT_1889 at 1901.128 kb on + strand, within EX28DRAFT_1889 at 1901.173 kb on - strand, within EX28DRAFT_1889 at 1901.177 kb on + strand, within EX28DRAFT_1889 at 1901.216 kb on - strand, within EX28DRAFT_1889 at 1901.216 kb on - strand, within EX28DRAFT_1889 at 1901.247 kb on + strand, within EX28DRAFT_1889 at 1901.378 kb on - strand, within EX28DRAFT_1889 at 1901.618 kb on - strand, within EX28DRAFT_1890 at 1901.618 kb on - strand, within EX28DRAFT_1890 at 1901.618 kb on - strand, within EX28DRAFT_1890 at 1901.621 kb on + strand, within EX28DRAFT_1890 at 1901.622 kb on - strand, within EX28DRAFT_1890 at 1901.622 kb on - strand, within EX28DRAFT_1890 at 1901.623 kb on + strand, within EX28DRAFT_1890 at 1901.633 kb on - strand, within EX28DRAFT_1890 at 1901.633 kb on - strand, within EX28DRAFT_1890 at 1901.634 kb on + strand, within EX28DRAFT_1890 at 1901.635 kb on - strand, within EX28DRAFT_1890 at 1901.702 kb on - strand, within EX28DRAFT_1890 at 1901.702 kb on - strand, within EX28DRAFT_1890 at 1901.702 kb on - strand, within EX28DRAFT_1890 at 1901.702 kb on - strand, within EX28DRAFT_1890 at 1901.706 kb on - strand, within EX28DRAFT_1890 at 1901.733 kb on + strand, within EX28DRAFT_1890 at 1901.799 kb on + strand, within EX28DRAFT_1890 at 1901.814 kb on + strand at 1901.815 kb on - strand at 1901.815 kb on - strand at 1901.847 kb on - strand at 1901.885 kb on - strand at 1901.885 kb on - strand at 1901.885 kb on - strand at 1901.980 kb on - strand, within EX28DRAFT_1891 at 1902.039 kb on - strand, within EX28DRAFT_1891 at 1902.130 kb on - strand, within EX28DRAFT_1891 at 1902.290 kb on + strand at 1902.294 kb on + strand at 1902.294 kb on + strand at 1902.294 kb on + strand at 1902.295 kb on - strand at 1902.295 kb on - strand at 1902.329 kb on - strand at 1902.329 kb on - strand at 1902.347 kb on - strand at 1902.361 kb on + strand at 1902.374 kb on + strand at 1902.374 kb on + strand at 1902.374 kb on + strand at 1902.392 kb on + strand at 1902.398 kb on - strand, within EX28DRAFT_1892 at 1902.457 kb on + strand, within EX28DRAFT_1892 at 1902.472 kb on - strand, within EX28DRAFT_1892 at 1902.472 kb on - strand, within EX28DRAFT_1892 at 1902.519 kb on - strand, within EX28DRAFT_1892 at 1902.665 kb on + strand, within EX28DRAFT_1892
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,900,757 - -0.5 1,900,807 + -0.9 1,900,808 - +0.2 1,900,996 - EX28DRAFT_1889 0.29 +0.1 1,901,128 + EX28DRAFT_1889 0.50 +0.4 1,901,173 - EX28DRAFT_1889 0.57 -0.1 1,901,177 + EX28DRAFT_1889 0.57 -0.9 1,901,216 - EX28DRAFT_1889 0.63 +0.6 1,901,216 - EX28DRAFT_1889 0.63 +0.6 1,901,247 + EX28DRAFT_1889 0.68 +1.4 1,901,378 - EX28DRAFT_1889 0.88 +0.3 1,901,618 - EX28DRAFT_1890 0.41 -2.0 1,901,618 - EX28DRAFT_1890 0.41 +0.2 1,901,618 - EX28DRAFT_1890 0.41 -0.1 1,901,621 + EX28DRAFT_1890 0.42 -0.1 1,901,622 - EX28DRAFT_1890 0.42 -0.2 1,901,622 - EX28DRAFT_1890 0.42 -1.4 1,901,623 + EX28DRAFT_1890 0.42 +0.1 1,901,633 - EX28DRAFT_1890 0.45 +0.3 1,901,633 - EX28DRAFT_1890 0.45 +0.3 1,901,634 + EX28DRAFT_1890 0.45 +0.4 1,901,635 - EX28DRAFT_1890 0.45 -0.4 1,901,702 - EX28DRAFT_1890 0.62 +0.4 1,901,702 - EX28DRAFT_1890 0.62 +0.1 1,901,702 - EX28DRAFT_1890 0.62 -0.3 1,901,702 - EX28DRAFT_1890 0.62 -0.7 1,901,706 - EX28DRAFT_1890 0.63 -0.3 1,901,733 + EX28DRAFT_1890 0.70 -1.6 1,901,799 + EX28DRAFT_1890 0.87 +0.1 1,901,814 + -1.7 1,901,815 - -1.0 1,901,815 - +0.1 1,901,847 - -0.1 1,901,885 - -0.3 1,901,885 - +0.8 1,901,885 - -0.6 1,901,980 - EX28DRAFT_1891 0.26 -0.7 1,902,039 - EX28DRAFT_1891 0.40 -0.2 1,902,130 - EX28DRAFT_1891 0.62 -3.7 1,902,290 + -0.4 1,902,294 + -2.2 1,902,294 + +0.2 1,902,294 + -0.7 1,902,295 - +0.0 1,902,295 - -0.2 1,902,329 - +0.1 1,902,329 - -0.3 1,902,347 - +0.3 1,902,361 + +0.6 1,902,374 + -1.1 1,902,374 + -0.9 1,902,374 + -0.1 1,902,392 + -0.9 1,902,398 - EX28DRAFT_1892 0.10 +0.1 1,902,457 + EX28DRAFT_1892 0.17 +1.6 1,902,472 - EX28DRAFT_1892 0.19 +1.2 1,902,472 - EX28DRAFT_1892 0.19 -1.3 1,902,519 - EX28DRAFT_1892 0.25 -0.0 1,902,665 + EX28DRAFT_1892 0.42 +0.6
Or see this region's nucleotide sequence