Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1848 and EX28DRAFT_1849 are separated by 75 nucleotides EX28DRAFT_1849 and EX28DRAFT_1850 are separated by 14 nucleotides
EX28DRAFT_1848: EX28DRAFT_1848 - Arabinose efflux permease, at 1,864,037 to 1,865,251
_1848
EX28DRAFT_1849: EX28DRAFT_1849 - flagellar hook-associated protein 3, at 1,865,327 to 1,866,280
_1849
EX28DRAFT_1850: EX28DRAFT_1850 - flagellar hook-associated protein FlgK, at 1,866,295 to 1,867,935
_1850
Position (kb)
1865
1866
1867 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1864.433 kb on - strand, within EX28DRAFT_1848 at 1864.485 kb on + strand, within EX28DRAFT_1848 at 1864.485 kb on + strand, within EX28DRAFT_1848 at 1864.485 kb on + strand, within EX28DRAFT_1848 at 1864.485 kb on + strand, within EX28DRAFT_1848 at 1864.486 kb on - strand, within EX28DRAFT_1848 at 1864.486 kb on - strand, within EX28DRAFT_1848 at 1864.486 kb on - strand, within EX28DRAFT_1848 at 1864.486 kb on - strand, within EX28DRAFT_1848 at 1864.489 kb on - strand, within EX28DRAFT_1848 at 1864.541 kb on + strand, within EX28DRAFT_1848 at 1864.590 kb on - strand, within EX28DRAFT_1848 at 1864.723 kb on + strand, within EX28DRAFT_1848 at 1864.738 kb on + strand, within EX28DRAFT_1848 at 1864.825 kb on - strand, within EX28DRAFT_1848 at 1865.080 kb on + strand, within EX28DRAFT_1848 at 1865.128 kb on + strand, within EX28DRAFT_1848 at 1865.319 kb on + strand at 1865.380 kb on - strand at 1865.725 kb on + strand, within EX28DRAFT_1849 at 1865.732 kb on - strand, within EX28DRAFT_1849 at 1865.773 kb on + strand, within EX28DRAFT_1849 at 1865.774 kb on - strand, within EX28DRAFT_1849 at 1865.823 kb on + strand, within EX28DRAFT_1849 at 1865.878 kb on + strand, within EX28DRAFT_1849 at 1865.995 kb on - strand, within EX28DRAFT_1849 at 1866.049 kb on + strand, within EX28DRAFT_1849 at 1866.082 kb on + strand, within EX28DRAFT_1849 at 1866.152 kb on - strand, within EX28DRAFT_1849 at 1866.204 kb on + strand at 1866.204 kb on + strand at 1866.255 kb on + strand at 1866.255 kb on + strand at 1866.271 kb on + strand at 1866.274 kb on + strand at 1866.309 kb on + strand at 1866.310 kb on - strand at 1866.341 kb on - strand at 1866.363 kb on - strand at 1866.363 kb on - strand at 1866.392 kb on + strand at 1866.525 kb on - strand, within EX28DRAFT_1850 at 1866.525 kb on - strand, within EX28DRAFT_1850 at 1866.525 kb on - strand, within EX28DRAFT_1850 at 1866.718 kb on - strand, within EX28DRAFT_1850 at 1866.789 kb on + strand, within EX28DRAFT_1850 at 1866.838 kb on - strand, within EX28DRAFT_1850 at 1866.849 kb on + strand, within EX28DRAFT_1850 at 1866.850 kb on - strand, within EX28DRAFT_1850 at 1866.851 kb on + strand, within EX28DRAFT_1850 at 1866.851 kb on + strand, within EX28DRAFT_1850 at 1866.851 kb on + strand, within EX28DRAFT_1850 at 1866.852 kb on - strand, within EX28DRAFT_1850 at 1867.060 kb on - strand, within EX28DRAFT_1850 at 1867.096 kb on + strand, within EX28DRAFT_1850 at 1867.257 kb on + strand, within EX28DRAFT_1850 at 1867.257 kb on + strand, within EX28DRAFT_1850 at 1867.258 kb on - strand, within EX28DRAFT_1850 at 1867.258 kb on - strand, within EX28DRAFT_1850 at 1867.258 kb on - strand, within EX28DRAFT_1850 at 1867.260 kb on + strand, within EX28DRAFT_1850 at 1867.261 kb on - strand, within EX28DRAFT_1850
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,864,433 - EX28DRAFT_1848 0.33 -0.1 1,864,485 + EX28DRAFT_1848 0.37 +1.2 1,864,485 + EX28DRAFT_1848 0.37 +0.1 1,864,485 + EX28DRAFT_1848 0.37 -0.3 1,864,485 + EX28DRAFT_1848 0.37 +0.3 1,864,486 - EX28DRAFT_1848 0.37 -0.6 1,864,486 - EX28DRAFT_1848 0.37 +1.1 1,864,486 - EX28DRAFT_1848 0.37 -0.6 1,864,486 - EX28DRAFT_1848 0.37 -0.6 1,864,489 - EX28DRAFT_1848 0.37 -0.4 1,864,541 + EX28DRAFT_1848 0.41 +0.0 1,864,590 - EX28DRAFT_1848 0.46 -0.3 1,864,723 + EX28DRAFT_1848 0.56 +0.1 1,864,738 + EX28DRAFT_1848 0.58 -0.9 1,864,825 - EX28DRAFT_1848 0.65 -0.9 1,865,080 + EX28DRAFT_1848 0.86 -0.5 1,865,128 + EX28DRAFT_1848 0.90 -0.4 1,865,319 + +0.1 1,865,380 - +1.3 1,865,725 + EX28DRAFT_1849 0.42 +0.3 1,865,732 - EX28DRAFT_1849 0.42 -1.2 1,865,773 + EX28DRAFT_1849 0.47 -2.0 1,865,774 - EX28DRAFT_1849 0.47 -0.4 1,865,823 + EX28DRAFT_1849 0.52 +0.4 1,865,878 + EX28DRAFT_1849 0.58 -0.3 1,865,995 - EX28DRAFT_1849 0.70 -0.5 1,866,049 + EX28DRAFT_1849 0.76 +0.1 1,866,082 + EX28DRAFT_1849 0.79 -0.2 1,866,152 - EX28DRAFT_1849 0.86 -0.5 1,866,204 + +0.0 1,866,204 + -0.6 1,866,255 + -0.1 1,866,255 + -0.3 1,866,271 + -0.3 1,866,274 + -0.9 1,866,309 + +0.0 1,866,310 - +0.0 1,866,341 - +0.1 1,866,363 - -0.4 1,866,363 - +0.5 1,866,392 + +0.1 1,866,525 - EX28DRAFT_1850 0.14 -0.6 1,866,525 - EX28DRAFT_1850 0.14 +0.4 1,866,525 - EX28DRAFT_1850 0.14 -0.1 1,866,718 - EX28DRAFT_1850 0.26 -0.0 1,866,789 + EX28DRAFT_1850 0.30 +0.5 1,866,838 - EX28DRAFT_1850 0.33 -0.0 1,866,849 + EX28DRAFT_1850 0.34 +0.2 1,866,850 - EX28DRAFT_1850 0.34 -1.5 1,866,851 + EX28DRAFT_1850 0.34 -0.4 1,866,851 + EX28DRAFT_1850 0.34 +0.1 1,866,851 + EX28DRAFT_1850 0.34 -0.0 1,866,852 - EX28DRAFT_1850 0.34 +0.2 1,867,060 - EX28DRAFT_1850 0.47 +0.5 1,867,096 + EX28DRAFT_1850 0.49 -2.8 1,867,257 + EX28DRAFT_1850 0.59 +0.5 1,867,257 + EX28DRAFT_1850 0.59 -0.7 1,867,258 - EX28DRAFT_1850 0.59 +0.8 1,867,258 - EX28DRAFT_1850 0.59 +0.6 1,867,258 - EX28DRAFT_1850 0.59 -1.4 1,867,260 + EX28DRAFT_1850 0.59 -0.2 1,867,261 - EX28DRAFT_1850 0.59 -1.5
Or see this region's nucleotide sequence