Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1817 and EX28DRAFT_1818 are separated by 75 nucleotides EX28DRAFT_1818 and EX28DRAFT_1819 are separated by 244 nucleotides EX28DRAFT_1819 and EX28DRAFT_1820 are separated by 59 nucleotides EX28DRAFT_1820 and EX28DRAFT_1821 are separated by 193 nucleotides
EX28DRAFT_1817: EX28DRAFT_1817 - Uncharacterized protein conserved in bacteria, at 1,836,609 to 1,837,574
_1817
EX28DRAFT_1818: EX28DRAFT_1818 - Protein of unknown function (DUF1471), at 1,837,650 to 1,837,907
_1818
EX28DRAFT_1819: EX28DRAFT_1819 - transcriptional regulator, TetR family, at 1,838,152 to 1,838,787
_1819
EX28DRAFT_1820: EX28DRAFT_1820 - Predicted outer membrane lipoprotein, at 1,838,847 to 1,839,386
_1820
EX28DRAFT_1821: EX28DRAFT_1821 - NADH dehydrogenase, FAD-containing subunit, at 1,839,580 to 1,840,884
_1821
Position (kb)
1838
1839 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1837.200 kb on + strand, within EX28DRAFT_1817 at 1837.259 kb on + strand, within EX28DRAFT_1817 at 1837.260 kb on - strand, within EX28DRAFT_1817 at 1837.260 kb on - strand, within EX28DRAFT_1817 at 1837.295 kb on + strand, within EX28DRAFT_1817 at 1837.326 kb on - strand, within EX28DRAFT_1817 at 1837.328 kb on + strand, within EX28DRAFT_1817 at 1837.334 kb on + strand, within EX28DRAFT_1817 at 1837.335 kb on - strand, within EX28DRAFT_1817 at 1837.457 kb on - strand, within EX28DRAFT_1817 at 1837.457 kb on - strand, within EX28DRAFT_1817 at 1837.616 kb on - strand at 1837.652 kb on - strand at 1837.657 kb on + strand at 1837.662 kb on - strand at 1837.686 kb on - strand, within EX28DRAFT_1818 at 1837.707 kb on - strand, within EX28DRAFT_1818 at 1837.772 kb on + strand, within EX28DRAFT_1818 at 1837.793 kb on + strand, within EX28DRAFT_1818 at 1837.794 kb on - strand, within EX28DRAFT_1818 at 1837.805 kb on + strand, within EX28DRAFT_1818 at 1837.805 kb on + strand, within EX28DRAFT_1818 at 1837.836 kb on + strand, within EX28DRAFT_1818 at 1837.836 kb on + strand, within EX28DRAFT_1818 at 1837.914 kb on + strand at 1837.914 kb on + strand at 1837.915 kb on - strand at 1837.915 kb on - strand at 1837.966 kb on - strand at 1838.058 kb on - strand at 1838.288 kb on + strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.505 kb on + strand, within EX28DRAFT_1819 at 1838.668 kb on + strand, within EX28DRAFT_1819 at 1838.740 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.858 kb on + strand at 1838.989 kb on + strand, within EX28DRAFT_1820 at 1839.022 kb on + strand, within EX28DRAFT_1820 at 1839.023 kb on - strand, within EX28DRAFT_1820 at 1839.026 kb on + strand, within EX28DRAFT_1820 at 1839.100 kb on - strand, within EX28DRAFT_1820 at 1839.286 kb on + strand, within EX28DRAFT_1820 at 1839.287 kb on - strand, within EX28DRAFT_1820 at 1839.303 kb on + strand, within EX28DRAFT_1820 at 1839.306 kb on + strand, within EX28DRAFT_1820 at 1839.361 kb on - strand at 1839.361 kb on - strand at 1839.484 kb on + strand at 1839.484 kb on + strand at 1839.485 kb on - strand at 1839.485 kb on - strand at 1839.486 kb on + strand at 1839.486 kb on + strand at 1839.492 kb on - strand at 1839.495 kb on + strand at 1839.495 kb on + strand at 1839.495 kb on + strand at 1839.507 kb on + strand at 1839.507 kb on + strand at 1839.654 kb on - strand at 1839.693 kb on + strand at 1839.695 kb on + strand at 1839.695 kb on + strand at 1839.695 kb on + strand at 1839.696 kb on - strand at 1839.696 kb on - strand at 1839.721 kb on + strand, within EX28DRAFT_1821 at 1839.722 kb on - strand, within EX28DRAFT_1821 at 1839.722 kb on - strand, within EX28DRAFT_1821
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,837,200 + EX28DRAFT_1817 0.61 +0.7 1,837,259 + EX28DRAFT_1817 0.67 +0.2 1,837,260 - EX28DRAFT_1817 0.67 -0.3 1,837,260 - EX28DRAFT_1817 0.67 +0.0 1,837,295 + EX28DRAFT_1817 0.71 +0.7 1,837,326 - EX28DRAFT_1817 0.74 -0.6 1,837,328 + EX28DRAFT_1817 0.74 +1.3 1,837,334 + EX28DRAFT_1817 0.75 -0.1 1,837,335 - EX28DRAFT_1817 0.75 -0.5 1,837,457 - EX28DRAFT_1817 0.88 -0.4 1,837,457 - EX28DRAFT_1817 0.88 +2.5 1,837,616 - -0.1 1,837,652 - -1.4 1,837,657 + -0.1 1,837,662 - +1.0 1,837,686 - EX28DRAFT_1818 0.14 +1.0 1,837,707 - EX28DRAFT_1818 0.22 -0.5 1,837,772 + EX28DRAFT_1818 0.47 -0.5 1,837,793 + EX28DRAFT_1818 0.55 +0.2 1,837,794 - EX28DRAFT_1818 0.56 +2.3 1,837,805 + EX28DRAFT_1818 0.60 -1.1 1,837,805 + EX28DRAFT_1818 0.60 +0.1 1,837,836 + EX28DRAFT_1818 0.72 -0.1 1,837,836 + EX28DRAFT_1818 0.72 +0.1 1,837,914 + +0.3 1,837,914 + -0.7 1,837,915 - -1.6 1,837,915 - +0.1 1,837,966 - -0.2 1,838,058 - +0.8 1,838,288 + EX28DRAFT_1819 0.21 +0.5 1,838,372 - EX28DRAFT_1819 0.35 -0.5 1,838,372 - EX28DRAFT_1819 0.35 -2.4 1,838,372 - EX28DRAFT_1819 0.35 -0.3 1,838,505 + EX28DRAFT_1819 0.56 +0.2 1,838,668 + EX28DRAFT_1819 0.81 -1.3 1,838,740 - +0.1 1,838,827 - -0.2 1,838,827 - -0.5 1,838,827 - +0.3 1,838,827 - -0.8 1,838,858 + -0.9 1,838,989 + EX28DRAFT_1820 0.26 -0.1 1,839,022 + EX28DRAFT_1820 0.32 -1.5 1,839,023 - EX28DRAFT_1820 0.33 +0.7 1,839,026 + EX28DRAFT_1820 0.33 +0.4 1,839,100 - EX28DRAFT_1820 0.47 +0.3 1,839,286 + EX28DRAFT_1820 0.81 -0.5 1,839,287 - EX28DRAFT_1820 0.81 -0.5 1,839,303 + EX28DRAFT_1820 0.84 -0.1 1,839,306 + EX28DRAFT_1820 0.85 -0.6 1,839,361 - -1.0 1,839,361 - -0.1 1,839,484 + +0.9 1,839,484 + +0.5 1,839,485 - +0.8 1,839,485 - +0.6 1,839,486 + -0.3 1,839,486 + +0.1 1,839,492 - +0.4 1,839,495 + -1.0 1,839,495 + +0.8 1,839,495 + -0.2 1,839,507 + -0.9 1,839,507 + -0.1 1,839,654 - -1.1 1,839,693 + +0.4 1,839,695 + -2.6 1,839,695 + -2.1 1,839,695 + -1.8 1,839,696 - -1.6 1,839,696 - -0.3 1,839,721 + EX28DRAFT_1821 0.11 -0.6 1,839,722 - EX28DRAFT_1821 0.11 -0.8 1,839,722 - EX28DRAFT_1821 0.11 -0.9
Or see this region's nucleotide sequence