Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1794 and EX28DRAFT_1795 are separated by 117 nucleotides EX28DRAFT_1795 and EX28DRAFT_1796 are separated by 9 nucleotides EX28DRAFT_1796 and EX28DRAFT_1797 are separated by 40 nucleotides
EX28DRAFT_1794: EX28DRAFT_1794 - isocitrate dehydrogenase (NADP) (EC 1.1.1.42), at 1,808,134 to 1,809,384
_1794
EX28DRAFT_1795: EX28DRAFT_1795 - pseudouridine synthase, at 1,809,502 to 1,810,155
_1795
EX28DRAFT_1796: EX28DRAFT_1796 - ADP-ribose pyrophosphatase, at 1,810,165 to 1,810,638
_1796
EX28DRAFT_1797: EX28DRAFT_1797 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 1,810,679 to 1,811,791
_1797
Position (kb) 1809
1810
1811 Strain fitness (log2 ratio) -1
0
1 at 1809.490 kb on + strand at 1809.494 kb on - strand at 1809.494 kb on - strand at 1809.499 kb on - strand at 1809.499 kb on - strand at 1809.500 kb on + strand at 1809.624 kb on + strand, within EX28DRAFT_1795 at 1809.697 kb on + strand, within EX28DRAFT_1795 at 1809.698 kb on - strand, within EX28DRAFT_1795 at 1809.698 kb on - strand, within EX28DRAFT_1795 at 1809.699 kb on + strand, within EX28DRAFT_1795 at 1809.700 kb on - strand, within EX28DRAFT_1795 at 1809.826 kb on + strand, within EX28DRAFT_1795 at 1809.827 kb on - strand, within EX28DRAFT_1795 at 1809.833 kb on + strand, within EX28DRAFT_1795 at 1810.164 kb on + strand at 1810.165 kb on - strand at 1810.284 kb on + strand, within EX28DRAFT_1796 at 1810.285 kb on - strand, within EX28DRAFT_1796 at 1810.596 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,809,490 + +0.4 1,809,494 - +0.8 1,809,494 - +0.4 1,809,499 - -0.2 1,809,499 - +0.2 1,809,500 + -0.2 1,809,624 + EX28DRAFT_1795 0.19 +1.1 1,809,697 + EX28DRAFT_1795 0.30 +0.4 1,809,698 - EX28DRAFT_1795 0.30 +0.0 1,809,698 - EX28DRAFT_1795 0.30 +0.1 1,809,699 + EX28DRAFT_1795 0.30 +1.2 1,809,700 - EX28DRAFT_1795 0.30 +0.1 1,809,826 + EX28DRAFT_1795 0.50 -1.4 1,809,827 - EX28DRAFT_1795 0.50 +0.0 1,809,833 + EX28DRAFT_1795 0.51 +0.3 1,810,164 + -1.0 1,810,165 - +0.6 1,810,284 + EX28DRAFT_1796 0.25 -0.5 1,810,285 - EX28DRAFT_1796 0.25 +0.1 1,810,596 + -0.1
Or see this region's nucleotide sequence