Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1783 and EX28DRAFT_1784 are separated by 0 nucleotides EX28DRAFT_1784 and EX28DRAFT_1785 are separated by 80 nucleotides EX28DRAFT_1785 and EX28DRAFT_1786 are separated by 268 nucleotides EX28DRAFT_1786 and EX28DRAFT_1787 are separated by 274 nucleotides EX28DRAFT_1787 and EX28DRAFT_1788 are separated by 216 nucleotides EX28DRAFT_1788 and EX28DRAFT_1789 are separated by 5 nucleotides
EX28DRAFT_1783: EX28DRAFT_1783 - Uncharacterized conserved protein, at 1,799,112 to 1,799,456
_1783
EX28DRAFT_1784: EX28DRAFT_1784 - hypothetical protein, at 1,799,457 to 1,799,762
_1784
EX28DRAFT_1785: EX28DRAFT_1785 - Putative hemolysin, at 1,799,843 to 1,800,097
_1785
EX28DRAFT_1786: EX28DRAFT_1786 - diguanylate cyclase (GGDEF) domain, at 1,800,366 to 1,801,436
_1786
EX28DRAFT_1787: EX28DRAFT_1787 - Predicted membrane protein, at 1,801,711 to 1,801,959
_1787
EX28DRAFT_1788: EX28DRAFT_1788 - RNA, at 1,802,176 to 1,802,239
_1788
EX28DRAFT_1789: EX28DRAFT_1789 - diguanylate cyclase (GGDEF) domain, at 1,802,245 to 1,803,717
_1789
Position (kb)
1800
1801
1802 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1799.392 kb on - strand, within EX28DRAFT_1783 at 1799.428 kb on + strand at 1799.429 kb on - strand at 1799.688 kb on - strand, within EX28DRAFT_1784 at 1799.750 kb on + strand at 1799.750 kb on + strand at 1799.762 kb on + strand at 1799.763 kb on - strand at 1799.763 kb on - strand at 1799.763 kb on - strand at 1799.803 kb on + strand at 1799.809 kb on + strand at 1799.810 kb on - strand at 1799.833 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.927 kb on + strand, within EX28DRAFT_1785 at 1800.001 kb on + strand, within EX28DRAFT_1785 at 1800.128 kb on + strand at 1800.192 kb on + strand at 1800.192 kb on + strand at 1800.192 kb on + strand at 1800.194 kb on + strand at 1800.194 kb on + strand at 1800.194 kb on + strand at 1800.306 kb on + strand at 1800.307 kb on - strand at 1800.362 kb on + strand at 1800.362 kb on + strand at 1800.362 kb on + strand at 1800.402 kb on + strand at 1800.403 kb on - strand at 1800.419 kb on + strand at 1800.420 kb on - strand at 1800.526 kb on - strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.539 kb on - strand, within EX28DRAFT_1786 at 1800.539 kb on - strand, within EX28DRAFT_1786 at 1800.539 kb on - strand, within EX28DRAFT_1786 at 1800.539 kb on - strand, within EX28DRAFT_1786 at 1800.563 kb on + strand, within EX28DRAFT_1786 at 1800.570 kb on + strand, within EX28DRAFT_1786 at 1800.665 kb on - strand, within EX28DRAFT_1786 at 1800.732 kb on + strand, within EX28DRAFT_1786 at 1800.732 kb on + strand, within EX28DRAFT_1786 at 1801.019 kb on + strand, within EX28DRAFT_1786 at 1801.020 kb on - strand, within EX28DRAFT_1786 at 1801.149 kb on - strand, within EX28DRAFT_1786 at 1801.259 kb on + strand, within EX28DRAFT_1786 at 1801.259 kb on + strand, within EX28DRAFT_1786 at 1801.364 kb on - strand at 1801.386 kb on + strand at 1801.387 kb on - strand at 1801.394 kb on + strand at 1801.578 kb on + strand at 1801.601 kb on + strand at 1801.666 kb on + strand at 1801.819 kb on - strand, within EX28DRAFT_1787 at 1801.819 kb on - strand, within EX28DRAFT_1787 at 1801.858 kb on + strand, within EX28DRAFT_1787 at 1801.859 kb on - strand, within EX28DRAFT_1787 at 1801.938 kb on + strand at 1801.959 kb on + strand at 1801.975 kb on - strand at 1801.989 kb on + strand at 1801.989 kb on + strand at 1802.012 kb on + strand at 1802.249 kb on - strand at 1802.317 kb on - strand at 1802.323 kb on - strand at 1802.323 kb on - strand at 1802.323 kb on - strand at 1802.401 kb on - strand, within EX28DRAFT_1789
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,799,392 - EX28DRAFT_1783 0.81 -0.3 1,799,428 + +1.5 1,799,429 - -0.6 1,799,688 - EX28DRAFT_1784 0.75 -0.2 1,799,750 + -0.2 1,799,750 + +1.2 1,799,762 + +0.8 1,799,763 - +0.2 1,799,763 - +0.1 1,799,763 - +0.8 1,799,803 + +0.2 1,799,809 + +0.2 1,799,810 - +0.1 1,799,833 + +0.3 1,799,835 + -0.4 1,799,835 + +0.0 1,799,835 + -1.1 1,799,835 + +0.1 1,799,835 + +0.6 1,799,835 + -0.5 1,799,835 + +0.5 1,799,836 - +0.1 1,799,836 - -2.5 1,799,836 - -0.3 1,799,836 - -0.8 1,799,836 - -0.4 1,799,927 + EX28DRAFT_1785 0.33 -0.6 1,800,001 + EX28DRAFT_1785 0.62 +0.2 1,800,128 + +0.3 1,800,192 + +0.5 1,800,192 + -0.6 1,800,192 + -0.2 1,800,194 + +0.2 1,800,194 + -1.3 1,800,194 + +0.3 1,800,306 + -0.4 1,800,307 - -0.4 1,800,362 + +0.2 1,800,362 + +0.7 1,800,362 + +0.2 1,800,402 + -0.1 1,800,403 - +0.4 1,800,419 + +0.0 1,800,420 - -0.3 1,800,526 - EX28DRAFT_1786 0.15 -0.2 1,800,538 + EX28DRAFT_1786 0.16 +0.2 1,800,538 + EX28DRAFT_1786 0.16 +0.4 1,800,538 + EX28DRAFT_1786 0.16 +0.4 1,800,538 + EX28DRAFT_1786 0.16 +1.6 1,800,538 + EX28DRAFT_1786 0.16 +0.3 1,800,539 - EX28DRAFT_1786 0.16 -0.2 1,800,539 - EX28DRAFT_1786 0.16 -0.0 1,800,539 - EX28DRAFT_1786 0.16 -0.0 1,800,539 - EX28DRAFT_1786 0.16 -0.0 1,800,563 + EX28DRAFT_1786 0.18 +2.0 1,800,570 + EX28DRAFT_1786 0.19 +0.4 1,800,665 - EX28DRAFT_1786 0.28 +0.1 1,800,732 + EX28DRAFT_1786 0.34 +0.3 1,800,732 + EX28DRAFT_1786 0.34 -0.8 1,801,019 + EX28DRAFT_1786 0.61 +0.4 1,801,020 - EX28DRAFT_1786 0.61 +0.2 1,801,149 - EX28DRAFT_1786 0.73 +0.3 1,801,259 + EX28DRAFT_1786 0.83 -0.3 1,801,259 + EX28DRAFT_1786 0.83 +0.6 1,801,364 - -0.2 1,801,386 + +0.2 1,801,387 - +0.0 1,801,394 + +0.1 1,801,578 + +0.5 1,801,601 + -1.2 1,801,666 + -0.2 1,801,819 - EX28DRAFT_1787 0.43 -0.6 1,801,819 - EX28DRAFT_1787 0.43 -1.3 1,801,858 + EX28DRAFT_1787 0.59 +0.7 1,801,859 - EX28DRAFT_1787 0.59 -0.1 1,801,938 + -0.6 1,801,959 + +0.0 1,801,975 - -0.5 1,801,989 + -1.6 1,801,989 + -1.3 1,802,012 + -0.5 1,802,249 - +0.8 1,802,317 - +0.3 1,802,323 - +0.0 1,802,323 - -1.7 1,802,323 - +0.7 1,802,401 - EX28DRAFT_1789 0.11 +0.2
Or see this region's nucleotide sequence