Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1763 and EX28DRAFT_1764 are separated by 71 nucleotides EX28DRAFT_1764 and EX28DRAFT_1765 are separated by 4 nucleotides
EX28DRAFT_1763: EX28DRAFT_1763 - Glutamate dehydrogenase/leucine dehydrogenase, at 1,777,038 to 1,778,381
_1763
EX28DRAFT_1764: EX28DRAFT_1764 - DNA topoisomerase III, bacteria and conjugative plasmid, at 1,778,453 to 1,780,360
_1764
EX28DRAFT_1765: EX28DRAFT_1765 - selenophosphate synthase (EC 2.7.9.3), at 1,780,365 to 1,781,408
_1765
Position (kb)
1778
1779
1780
1781 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1778.310 kb on + strand at 1778.311 kb on - strand at 1778.379 kb on + strand at 1778.379 kb on + strand at 1778.380 kb on - strand at 1778.562 kb on + strand at 1778.619 kb on - strand at 1778.720 kb on - strand, within EX28DRAFT_1764 at 1778.722 kb on - strand, within EX28DRAFT_1764 at 1778.722 kb on - strand, within EX28DRAFT_1764 at 1778.722 kb on - strand, within EX28DRAFT_1764 at 1778.722 kb on - strand, within EX28DRAFT_1764 at 1779.004 kb on + strand, within EX28DRAFT_1764 at 1779.064 kb on + strand, within EX28DRAFT_1764 at 1779.065 kb on - strand, within EX28DRAFT_1764 at 1779.104 kb on + strand, within EX28DRAFT_1764 at 1779.132 kb on + strand, within EX28DRAFT_1764 at 1779.153 kb on + strand, within EX28DRAFT_1764 at 1779.379 kb on - strand, within EX28DRAFT_1764 at 1779.379 kb on - strand, within EX28DRAFT_1764 at 1779.379 kb on - strand, within EX28DRAFT_1764 at 1779.379 kb on - strand, within EX28DRAFT_1764 at 1779.379 kb on - strand, within EX28DRAFT_1764 at 1779.392 kb on - strand, within EX28DRAFT_1764 at 1779.403 kb on - strand, within EX28DRAFT_1764 at 1779.525 kb on + strand, within EX28DRAFT_1764 at 1779.526 kb on - strand, within EX28DRAFT_1764 at 1779.724 kb on + strand, within EX28DRAFT_1764 at 1779.724 kb on + strand, within EX28DRAFT_1764 at 1779.725 kb on - strand, within EX28DRAFT_1764 at 1780.201 kb on - strand at 1780.237 kb on + strand at 1780.237 kb on + strand at 1780.237 kb on + strand at 1780.237 kb on + strand at 1780.238 kb on - strand at 1780.238 kb on - strand at 1780.300 kb on + strand at 1780.568 kb on - strand, within EX28DRAFT_1765 at 1780.616 kb on + strand, within EX28DRAFT_1765 at 1780.617 kb on - strand, within EX28DRAFT_1765 at 1780.618 kb on + strand, within EX28DRAFT_1765 at 1780.619 kb on - strand, within EX28DRAFT_1765 at 1780.619 kb on - strand, within EX28DRAFT_1765 at 1780.619 kb on - strand, within EX28DRAFT_1765 at 1780.619 kb on - strand, within EX28DRAFT_1765 at 1780.619 kb on - strand, within EX28DRAFT_1765 at 1780.850 kb on + strand, within EX28DRAFT_1765 at 1780.985 kb on + strand, within EX28DRAFT_1765 at 1780.986 kb on - strand, within EX28DRAFT_1765 at 1780.986 kb on - strand, within EX28DRAFT_1765 at 1780.986 kb on - strand, within EX28DRAFT_1765 at 1780.986 kb on - strand, within EX28DRAFT_1765 at 1781.198 kb on + strand, within EX28DRAFT_1765 at 1781.199 kb on - strand, within EX28DRAFT_1765 at 1781.238 kb on + strand, within EX28DRAFT_1765 at 1781.238 kb on + strand, within EX28DRAFT_1765 at 1781.238 kb on + strand, within EX28DRAFT_1765 at 1781.239 kb on - strand, within EX28DRAFT_1765 at 1781.239 kb on - strand, within EX28DRAFT_1765 at 1781.239 kb on - strand, within EX28DRAFT_1765
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,778,310 + -1.9 1,778,311 - +0.1 1,778,379 + -1.1 1,778,379 + -0.5 1,778,380 - -0.8 1,778,562 + +0.1 1,778,619 - -0.5 1,778,720 - EX28DRAFT_1764 0.14 -0.3 1,778,722 - EX28DRAFT_1764 0.14 -0.3 1,778,722 - EX28DRAFT_1764 0.14 +0.0 1,778,722 - EX28DRAFT_1764 0.14 -0.5 1,778,722 - EX28DRAFT_1764 0.14 +0.1 1,779,004 + EX28DRAFT_1764 0.29 -0.2 1,779,064 + EX28DRAFT_1764 0.32 -0.2 1,779,065 - EX28DRAFT_1764 0.32 -1.9 1,779,104 + EX28DRAFT_1764 0.34 -0.9 1,779,132 + EX28DRAFT_1764 0.36 +0.5 1,779,153 + EX28DRAFT_1764 0.37 -0.0 1,779,379 - EX28DRAFT_1764 0.49 -0.0 1,779,379 - EX28DRAFT_1764 0.49 -0.8 1,779,379 - EX28DRAFT_1764 0.49 +0.7 1,779,379 - EX28DRAFT_1764 0.49 -0.0 1,779,379 - EX28DRAFT_1764 0.49 +0.1 1,779,392 - EX28DRAFT_1764 0.49 -0.4 1,779,403 - EX28DRAFT_1764 0.50 +0.0 1,779,525 + EX28DRAFT_1764 0.56 -0.5 1,779,526 - EX28DRAFT_1764 0.56 -0.5 1,779,724 + EX28DRAFT_1764 0.67 -0.3 1,779,724 + EX28DRAFT_1764 0.67 -0.5 1,779,725 - EX28DRAFT_1764 0.67 +0.3 1,780,201 - +0.2 1,780,237 + +0.4 1,780,237 + -1.0 1,780,237 + -0.5 1,780,237 + +0.1 1,780,238 - -0.4 1,780,238 - -0.1 1,780,300 + +1.3 1,780,568 - EX28DRAFT_1765 0.19 -2.1 1,780,616 + EX28DRAFT_1765 0.24 -3.1 1,780,617 - EX28DRAFT_1765 0.24 +0.4 1,780,618 + EX28DRAFT_1765 0.24 +0.4 1,780,619 - EX28DRAFT_1765 0.24 +0.4 1,780,619 - EX28DRAFT_1765 0.24 -0.6 1,780,619 - EX28DRAFT_1765 0.24 -0.1 1,780,619 - EX28DRAFT_1765 0.24 -0.1 1,780,619 - EX28DRAFT_1765 0.24 -1.3 1,780,850 + EX28DRAFT_1765 0.46 +0.1 1,780,985 + EX28DRAFT_1765 0.59 +0.0 1,780,986 - EX28DRAFT_1765 0.59 +0.9 1,780,986 - EX28DRAFT_1765 0.59 -0.7 1,780,986 - EX28DRAFT_1765 0.59 -0.6 1,780,986 - EX28DRAFT_1765 0.59 -0.0 1,781,198 + EX28DRAFT_1765 0.80 +0.5 1,781,199 - EX28DRAFT_1765 0.80 -0.6 1,781,238 + EX28DRAFT_1765 0.84 -0.1 1,781,238 + EX28DRAFT_1765 0.84 +1.0 1,781,238 + EX28DRAFT_1765 0.84 +0.3 1,781,239 - EX28DRAFT_1765 0.84 +1.7 1,781,239 - EX28DRAFT_1765 0.84 +0.0 1,781,239 - EX28DRAFT_1765 0.84 -0.2
Or see this region's nucleotide sequence