Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1751 and EX28DRAFT_1752 overlap by 4 nucleotides EX28DRAFT_1752 and EX28DRAFT_1753 are separated by 433 nucleotides
EX28DRAFT_1751: EX28DRAFT_1751 - arginine N-succinyltransferase, at 1,766,043 to 1,767,077
_1751
EX28DRAFT_1752: EX28DRAFT_1752 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 1,767,074 to 1,768,294
_1752
EX28DRAFT_1753: EX28DRAFT_1753 - exodeoxyribonuclease III, at 1,768,728 to 1,769,534
_1753
Position (kb)
1767
1768
1769 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1766.100 kb on - strand at 1766.189 kb on - strand, within EX28DRAFT_1751 at 1766.332 kb on + strand, within EX28DRAFT_1751 at 1766.333 kb on - strand, within EX28DRAFT_1751 at 1766.440 kb on + strand, within EX28DRAFT_1751 at 1766.441 kb on - strand, within EX28DRAFT_1751 at 1766.441 kb on - strand, within EX28DRAFT_1751 at 1766.441 kb on - strand, within EX28DRAFT_1751 at 1766.441 kb on - strand, within EX28DRAFT_1751 at 1766.444 kb on + strand, within EX28DRAFT_1751 at 1766.444 kb on + strand, within EX28DRAFT_1751 at 1766.444 kb on + strand, within EX28DRAFT_1751 at 1766.445 kb on - strand, within EX28DRAFT_1751 at 1766.500 kb on + strand, within EX28DRAFT_1751 at 1766.564 kb on - strand, within EX28DRAFT_1751 at 1766.637 kb on - strand, within EX28DRAFT_1751 at 1766.642 kb on + strand, within EX28DRAFT_1751 at 1766.642 kb on + strand, within EX28DRAFT_1751 at 1766.666 kb on - strand, within EX28DRAFT_1751 at 1766.767 kb on + strand, within EX28DRAFT_1751 at 1766.767 kb on + strand, within EX28DRAFT_1751 at 1767.180 kb on - strand at 1767.180 kb on - strand at 1767.235 kb on + strand, within EX28DRAFT_1752 at 1767.242 kb on - strand, within EX28DRAFT_1752 at 1767.580 kb on + strand, within EX28DRAFT_1752 at 1767.580 kb on + strand, within EX28DRAFT_1752 at 1767.582 kb on + strand, within EX28DRAFT_1752 at 1767.582 kb on + strand, within EX28DRAFT_1752 at 1767.582 kb on + strand, within EX28DRAFT_1752 at 1767.583 kb on - strand, within EX28DRAFT_1752 at 1767.583 kb on - strand, within EX28DRAFT_1752 at 1767.583 kb on - strand, within EX28DRAFT_1752 at 1767.588 kb on + strand, within EX28DRAFT_1752 at 1767.589 kb on - strand, within EX28DRAFT_1752 at 1767.786 kb on + strand, within EX28DRAFT_1752 at 1767.835 kb on - strand, within EX28DRAFT_1752 at 1767.989 kb on - strand, within EX28DRAFT_1752 at 1768.173 kb on + strand at 1768.174 kb on - strand at 1768.174 kb on - strand at 1768.243 kb on - strand at 1768.280 kb on - strand at 1768.294 kb on + strand at 1768.295 kb on - strand at 1768.362 kb on + strand at 1768.402 kb on - strand at 1768.536 kb on + strand at 1768.621 kb on + strand at 1768.639 kb on - strand at 1768.651 kb on + strand at 1768.745 kb on + strand at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.894 kb on - strand, within EX28DRAFT_1753 at 1768.894 kb on - strand, within EX28DRAFT_1753 at 1769.053 kb on - strand, within EX28DRAFT_1753 at 1769.131 kb on - strand, within EX28DRAFT_1753 at 1769.186 kb on + strand, within EX28DRAFT_1753
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,766,100 - -1.2 1,766,189 - EX28DRAFT_1751 0.14 -0.4 1,766,332 + EX28DRAFT_1751 0.28 -0.7 1,766,333 - EX28DRAFT_1751 0.28 +0.6 1,766,440 + EX28DRAFT_1751 0.38 +1.8 1,766,441 - EX28DRAFT_1751 0.38 +0.4 1,766,441 - EX28DRAFT_1751 0.38 +0.1 1,766,441 - EX28DRAFT_1751 0.38 +0.1 1,766,441 - EX28DRAFT_1751 0.38 -0.5 1,766,444 + EX28DRAFT_1751 0.39 -1.0 1,766,444 + EX28DRAFT_1751 0.39 +0.4 1,766,444 + EX28DRAFT_1751 0.39 -0.5 1,766,445 - EX28DRAFT_1751 0.39 -0.6 1,766,500 + EX28DRAFT_1751 0.44 +0.2 1,766,564 - EX28DRAFT_1751 0.50 +0.3 1,766,637 - EX28DRAFT_1751 0.57 +0.5 1,766,642 + EX28DRAFT_1751 0.58 +0.9 1,766,642 + EX28DRAFT_1751 0.58 +0.7 1,766,666 - EX28DRAFT_1751 0.60 +0.5 1,766,767 + EX28DRAFT_1751 0.70 -0.5 1,766,767 + EX28DRAFT_1751 0.70 -0.1 1,767,180 - +0.5 1,767,180 - -0.7 1,767,235 + EX28DRAFT_1752 0.13 +1.3 1,767,242 - EX28DRAFT_1752 0.14 -0.2 1,767,580 + EX28DRAFT_1752 0.41 +0.3 1,767,580 + EX28DRAFT_1752 0.41 -0.3 1,767,582 + EX28DRAFT_1752 0.42 -0.1 1,767,582 + EX28DRAFT_1752 0.42 -0.6 1,767,582 + EX28DRAFT_1752 0.42 +0.3 1,767,583 - EX28DRAFT_1752 0.42 +0.8 1,767,583 - EX28DRAFT_1752 0.42 +2.3 1,767,583 - EX28DRAFT_1752 0.42 -0.7 1,767,588 + EX28DRAFT_1752 0.42 +0.5 1,767,589 - EX28DRAFT_1752 0.42 -0.1 1,767,786 + EX28DRAFT_1752 0.58 +0.6 1,767,835 - EX28DRAFT_1752 0.62 -0.1 1,767,989 - EX28DRAFT_1752 0.75 +1.3 1,768,173 + +0.1 1,768,174 - -0.2 1,768,174 - +0.4 1,768,243 - -0.1 1,768,280 - -0.1 1,768,294 + +0.6 1,768,295 - +0.2 1,768,362 + -0.3 1,768,402 - +0.0 1,768,536 + -0.8 1,768,621 + -0.5 1,768,639 - -0.5 1,768,651 + +0.6 1,768,745 + -0.2 1,768,847 + EX28DRAFT_1753 0.15 -2.1 1,768,847 + EX28DRAFT_1753 0.15 -0.2 1,768,847 + EX28DRAFT_1753 0.15 +0.2 1,768,847 + EX28DRAFT_1753 0.15 +1.1 1,768,848 - EX28DRAFT_1753 0.15 -0.4 1,768,848 - EX28DRAFT_1753 0.15 +0.3 1,768,848 - EX28DRAFT_1753 0.15 -0.2 1,768,848 - EX28DRAFT_1753 0.15 +1.9 1,768,893 + EX28DRAFT_1753 0.20 +0.5 1,768,893 + EX28DRAFT_1753 0.20 +0.6 1,768,893 + EX28DRAFT_1753 0.20 -0.1 1,768,894 - EX28DRAFT_1753 0.21 +0.1 1,768,894 - EX28DRAFT_1753 0.21 -0.6 1,769,053 - EX28DRAFT_1753 0.40 -0.7 1,769,131 - EX28DRAFT_1753 0.50 +0.4 1,769,186 + EX28DRAFT_1753 0.57 -0.1
Or see this region's nucleotide sequence