Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1752

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1751 and EX28DRAFT_1752 overlap by 4 nucleotidesEX28DRAFT_1752 and EX28DRAFT_1753 are separated by 433 nucleotides EX28DRAFT_1751: EX28DRAFT_1751 - arginine N-succinyltransferase, at 1,766,043 to 1,767,077 _1751 EX28DRAFT_1752: EX28DRAFT_1752 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 1,767,074 to 1,768,294 _1752 EX28DRAFT_1753: EX28DRAFT_1753 - exodeoxyribonuclease III, at 1,768,728 to 1,769,534 _1753 Position (kb) 1767 1768 1769Strain fitness (log2 ratio) -2 -1 0 1 2at 1766.100 kb on - strandat 1766.189 kb on - strand, within EX28DRAFT_1751at 1766.332 kb on + strand, within EX28DRAFT_1751at 1766.333 kb on - strand, within EX28DRAFT_1751at 1766.440 kb on + strand, within EX28DRAFT_1751at 1766.441 kb on - strand, within EX28DRAFT_1751at 1766.441 kb on - strand, within EX28DRAFT_1751at 1766.441 kb on - strand, within EX28DRAFT_1751at 1766.441 kb on - strand, within EX28DRAFT_1751at 1766.444 kb on + strand, within EX28DRAFT_1751at 1766.444 kb on + strand, within EX28DRAFT_1751at 1766.444 kb on + strand, within EX28DRAFT_1751at 1766.445 kb on - strand, within EX28DRAFT_1751at 1766.500 kb on + strand, within EX28DRAFT_1751at 1766.564 kb on - strand, within EX28DRAFT_1751at 1766.637 kb on - strand, within EX28DRAFT_1751at 1766.642 kb on + strand, within EX28DRAFT_1751at 1766.642 kb on + strand, within EX28DRAFT_1751at 1766.666 kb on - strand, within EX28DRAFT_1751at 1766.767 kb on + strand, within EX28DRAFT_1751at 1766.767 kb on + strand, within EX28DRAFT_1751at 1767.180 kb on - strandat 1767.180 kb on - strandat 1767.235 kb on + strand, within EX28DRAFT_1752at 1767.242 kb on - strand, within EX28DRAFT_1752at 1767.580 kb on + strand, within EX28DRAFT_1752at 1767.580 kb on + strand, within EX28DRAFT_1752at 1767.582 kb on + strand, within EX28DRAFT_1752at 1767.582 kb on + strand, within EX28DRAFT_1752at 1767.582 kb on + strand, within EX28DRAFT_1752at 1767.583 kb on - strand, within EX28DRAFT_1752at 1767.583 kb on - strand, within EX28DRAFT_1752at 1767.583 kb on - strand, within EX28DRAFT_1752at 1767.588 kb on + strand, within EX28DRAFT_1752at 1767.589 kb on - strand, within EX28DRAFT_1752at 1767.786 kb on + strand, within EX28DRAFT_1752at 1767.835 kb on - strand, within EX28DRAFT_1752at 1767.989 kb on - strand, within EX28DRAFT_1752at 1768.173 kb on + strandat 1768.174 kb on - strandat 1768.174 kb on - strandat 1768.243 kb on - strandat 1768.280 kb on - strandat 1768.294 kb on + strandat 1768.295 kb on - strandat 1768.362 kb on + strandat 1768.402 kb on - strandat 1768.536 kb on + strandat 1768.621 kb on + strandat 1768.639 kb on - strandat 1768.651 kb on + strandat 1768.745 kb on + strandat 1768.847 kb on + strand, within EX28DRAFT_1753at 1768.847 kb on + strand, within EX28DRAFT_1753at 1768.847 kb on + strand, within EX28DRAFT_1753at 1768.847 kb on + strand, within EX28DRAFT_1753at 1768.848 kb on - strand, within EX28DRAFT_1753at 1768.848 kb on - strand, within EX28DRAFT_1753at 1768.848 kb on - strand, within EX28DRAFT_1753at 1768.848 kb on - strand, within EX28DRAFT_1753at 1768.893 kb on + strand, within EX28DRAFT_1753at 1768.893 kb on + strand, within EX28DRAFT_1753at 1768.893 kb on + strand, within EX28DRAFT_1753at 1768.894 kb on - strand, within EX28DRAFT_1753at 1768.894 kb on - strand, within EX28DRAFT_1753at 1769.053 kb on - strand, within EX28DRAFT_1753at 1769.131 kb on - strand, within EX28DRAFT_1753at 1769.186 kb on + strand, within EX28DRAFT_1753

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,766,100 - -1.2
1,766,189 - EX28DRAFT_1751 0.14 -0.4
1,766,332 + EX28DRAFT_1751 0.28 -0.7
1,766,333 - EX28DRAFT_1751 0.28 +0.6
1,766,440 + EX28DRAFT_1751 0.38 +1.8
1,766,441 - EX28DRAFT_1751 0.38 +0.4
1,766,441 - EX28DRAFT_1751 0.38 +0.1
1,766,441 - EX28DRAFT_1751 0.38 +0.1
1,766,441 - EX28DRAFT_1751 0.38 -0.5
1,766,444 + EX28DRAFT_1751 0.39 -1.0
1,766,444 + EX28DRAFT_1751 0.39 +0.4
1,766,444 + EX28DRAFT_1751 0.39 -0.5
1,766,445 - EX28DRAFT_1751 0.39 -0.6
1,766,500 + EX28DRAFT_1751 0.44 +0.2
1,766,564 - EX28DRAFT_1751 0.50 +0.3
1,766,637 - EX28DRAFT_1751 0.57 +0.5
1,766,642 + EX28DRAFT_1751 0.58 +0.9
1,766,642 + EX28DRAFT_1751 0.58 +0.7
1,766,666 - EX28DRAFT_1751 0.60 +0.5
1,766,767 + EX28DRAFT_1751 0.70 -0.5
1,766,767 + EX28DRAFT_1751 0.70 -0.1
1,767,180 - +0.5
1,767,180 - -0.7
1,767,235 + EX28DRAFT_1752 0.13 +1.3
1,767,242 - EX28DRAFT_1752 0.14 -0.2
1,767,580 + EX28DRAFT_1752 0.41 +0.3
1,767,580 + EX28DRAFT_1752 0.41 -0.3
1,767,582 + EX28DRAFT_1752 0.42 -0.1
1,767,582 + EX28DRAFT_1752 0.42 -0.6
1,767,582 + EX28DRAFT_1752 0.42 +0.3
1,767,583 - EX28DRAFT_1752 0.42 +0.8
1,767,583 - EX28DRAFT_1752 0.42 +2.3
1,767,583 - EX28DRAFT_1752 0.42 -0.7
1,767,588 + EX28DRAFT_1752 0.42 +0.5
1,767,589 - EX28DRAFT_1752 0.42 -0.1
1,767,786 + EX28DRAFT_1752 0.58 +0.6
1,767,835 - EX28DRAFT_1752 0.62 -0.1
1,767,989 - EX28DRAFT_1752 0.75 +1.3
1,768,173 + +0.1
1,768,174 - -0.2
1,768,174 - +0.4
1,768,243 - -0.1
1,768,280 - -0.1
1,768,294 + +0.6
1,768,295 - +0.2
1,768,362 + -0.3
1,768,402 - +0.0
1,768,536 + -0.8
1,768,621 + -0.5
1,768,639 - -0.5
1,768,651 + +0.6
1,768,745 + -0.2
1,768,847 + EX28DRAFT_1753 0.15 -2.1
1,768,847 + EX28DRAFT_1753 0.15 -0.2
1,768,847 + EX28DRAFT_1753 0.15 +0.2
1,768,847 + EX28DRAFT_1753 0.15 +1.1
1,768,848 - EX28DRAFT_1753 0.15 -0.4
1,768,848 - EX28DRAFT_1753 0.15 +0.3
1,768,848 - EX28DRAFT_1753 0.15 -0.2
1,768,848 - EX28DRAFT_1753 0.15 +1.9
1,768,893 + EX28DRAFT_1753 0.20 +0.5
1,768,893 + EX28DRAFT_1753 0.20 +0.6
1,768,893 + EX28DRAFT_1753 0.20 -0.1
1,768,894 - EX28DRAFT_1753 0.21 +0.1
1,768,894 - EX28DRAFT_1753 0.21 -0.6
1,769,053 - EX28DRAFT_1753 0.40 -0.7
1,769,131 - EX28DRAFT_1753 0.50 +0.4
1,769,186 + EX28DRAFT_1753 0.57 -0.1

Or see this region's nucleotide sequence