Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1717

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1715 and EX28DRAFT_1716 are separated by 74 nucleotidesEX28DRAFT_1716 and EX28DRAFT_1717 overlap by 1 nucleotidesEX28DRAFT_1717 and EX28DRAFT_1718 are separated by 34 nucleotides EX28DRAFT_1715: EX28DRAFT_1715 - Cell wall-associated hydrolases (invasion-associated proteins), at 1,731,979 to 1,732,443 _1715 EX28DRAFT_1716: EX28DRAFT_1716 - ABC-type cobalamin transport system, ATPase component, at 1,732,518 to 1,733,273 _1716 EX28DRAFT_1717: EX28DRAFT_1717 - Glutathione peroxidase, at 1,733,273 to 1,733,824 _1717 EX28DRAFT_1718: EX28DRAFT_1718 - ABC-type cobalamin transport system, permease component, at 1,733,859 to 1,734,839 _1718 Position (kb) 1733 1734Strain fitness (log2 ratio) -1 0 1at 1732.520 kb on - strandat 1732.533 kb on - strandat 1732.547 kb on + strandat 1732.547 kb on + strandat 1732.547 kb on + strandat 1732.547 kb on + strandat 1732.548 kb on - strandat 1732.558 kb on - strandat 1732.793 kb on + strand, within EX28DRAFT_1716at 1732.793 kb on + strand, within EX28DRAFT_1716at 1732.830 kb on - strand, within EX28DRAFT_1716at 1732.830 kb on - strand, within EX28DRAFT_1716at 1732.920 kb on - strand, within EX28DRAFT_1716at 1733.045 kb on - strand, within EX28DRAFT_1716at 1733.274 kb on + strandat 1733.566 kb on - strand, within EX28DRAFT_1717at 1733.588 kb on - strand, within EX28DRAFT_1717at 1733.738 kb on - strand, within EX28DRAFT_1717at 1733.738 kb on - strand, within EX28DRAFT_1717at 1733.875 kb on - strandat 1733.878 kb on - strandat 1733.878 kb on - strandat 1733.878 kb on - strandat 1733.888 kb on + strandat 1733.967 kb on - strand, within EX28DRAFT_1718at 1734.126 kb on - strand, within EX28DRAFT_1718at 1734.126 kb on - strand, within EX28DRAFT_1718at 1734.129 kb on + strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.132 kb on + strand, within EX28DRAFT_1718at 1734.132 kb on + strand, within EX28DRAFT_1718at 1734.133 kb on - strand, within EX28DRAFT_1718at 1734.203 kb on + strand, within EX28DRAFT_1718at 1734.204 kb on - strand, within EX28DRAFT_1718at 1734.204 kb on - strand, within EX28DRAFT_1718at 1734.311 kb on - strand, within EX28DRAFT_1718at 1734.421 kb on - strand, within EX28DRAFT_1718at 1734.491 kb on + strand, within EX28DRAFT_1718at 1734.491 kb on + strand, within EX28DRAFT_1718at 1734.492 kb on - strand, within EX28DRAFT_1718at 1734.492 kb on - strand, within EX28DRAFT_1718at 1734.613 kb on - strand, within EX28DRAFT_1718at 1734.613 kb on - strand, within EX28DRAFT_1718

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,732,520 - +0.1
1,732,533 - +0.6
1,732,547 + +0.5
1,732,547 + +0.7
1,732,547 + +0.2
1,732,547 + +0.7
1,732,548 - -0.1
1,732,558 - -0.6
1,732,793 + EX28DRAFT_1716 0.36 -0.3
1,732,793 + EX28DRAFT_1716 0.36 +0.2
1,732,830 - EX28DRAFT_1716 0.41 +0.2
1,732,830 - EX28DRAFT_1716 0.41 +0.5
1,732,920 - EX28DRAFT_1716 0.53 +1.2
1,733,045 - EX28DRAFT_1716 0.70 -0.1
1,733,274 + +0.5
1,733,566 - EX28DRAFT_1717 0.53 -0.5
1,733,588 - EX28DRAFT_1717 0.57 -0.3
1,733,738 - EX28DRAFT_1717 0.84 -1.6
1,733,738 - EX28DRAFT_1717 0.84 -0.1
1,733,875 - -0.0
1,733,878 - -0.1
1,733,878 - +0.2
1,733,878 - +0.6
1,733,888 + +0.0
1,733,967 - EX28DRAFT_1718 0.11 +0.6
1,734,126 - EX28DRAFT_1718 0.27 -0.4
1,734,126 - EX28DRAFT_1718 0.27 +0.2
1,734,129 + EX28DRAFT_1718 0.28 +0.2
1,734,130 - EX28DRAFT_1718 0.28 +0.2
1,734,130 - EX28DRAFT_1718 0.28 +0.1
1,734,130 - EX28DRAFT_1718 0.28 -0.2
1,734,130 - EX28DRAFT_1718 0.28 +0.0
1,734,130 - EX28DRAFT_1718 0.28 +0.4
1,734,130 - EX28DRAFT_1718 0.28 -0.1
1,734,132 + EX28DRAFT_1718 0.28 +0.2
1,734,132 + EX28DRAFT_1718 0.28 -1.3
1,734,133 - EX28DRAFT_1718 0.28 +0.3
1,734,203 + EX28DRAFT_1718 0.35 +0.5
1,734,204 - EX28DRAFT_1718 0.35 +0.5
1,734,204 - EX28DRAFT_1718 0.35 +0.1
1,734,311 - EX28DRAFT_1718 0.46 -0.8
1,734,421 - EX28DRAFT_1718 0.57 +0.2
1,734,491 + EX28DRAFT_1718 0.64 -0.1
1,734,491 + EX28DRAFT_1718 0.64 -0.2
1,734,492 - EX28DRAFT_1718 0.65 +1.3
1,734,492 - EX28DRAFT_1718 0.65 +0.2
1,734,613 - EX28DRAFT_1718 0.77 -0.2
1,734,613 - EX28DRAFT_1718 0.77 +1.2

Or see this region's nucleotide sequence