Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1656 and EX28DRAFT_1657 are separated by 114 nucleotides EX28DRAFT_1657 and EX28DRAFT_1658 are separated by 297 nucleotides
EX28DRAFT_1656: EX28DRAFT_1656 - Transcriptional regulator, at 1,672,167 to 1,673,078
_1656
EX28DRAFT_1657: EX28DRAFT_1657 - drug resistance transporter, Bcr/CflA subfamily, at 1,673,193 to 1,674,392
_1657
EX28DRAFT_1658: EX28DRAFT_1658 - Cyclopropane fatty acid synthase and related methyltransferases, at 1,674,690 to 1,675,838
_1658
Position (kb)
1673
1674
1675 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1672.479 kb on - strand, within EX28DRAFT_1656 at 1672.634 kb on + strand, within EX28DRAFT_1656 at 1673.052 kb on + strand at 1673.147 kb on + strand at 1673.148 kb on - strand at 1673.164 kb on + strand at 1673.165 kb on - strand at 1673.166 kb on + strand at 1673.167 kb on - strand at 1673.167 kb on - strand at 1673.167 kb on - strand at 1673.191 kb on + strand at 1673.192 kb on - strand at 1673.215 kb on + strand at 1673.262 kb on - strand at 1673.262 kb on - strand at 1673.265 kb on + strand at 1673.265 kb on + strand at 1673.265 kb on + strand at 1673.266 kb on - strand at 1673.266 kb on - strand at 1673.266 kb on - strand at 1673.300 kb on - strand at 1673.300 kb on - strand at 1673.597 kb on + strand, within EX28DRAFT_1657 at 1673.707 kb on + strand, within EX28DRAFT_1657 at 1673.829 kb on + strand, within EX28DRAFT_1657 at 1673.830 kb on - strand, within EX28DRAFT_1657 at 1673.926 kb on - strand, within EX28DRAFT_1657 at 1674.028 kb on - strand, within EX28DRAFT_1657 at 1674.469 kb on + strand at 1674.469 kb on + strand at 1674.469 kb on + strand at 1674.470 kb on - strand at 1674.475 kb on - strand at 1674.493 kb on + strand at 1674.494 kb on - strand at 1674.502 kb on + strand at 1674.506 kb on - strand at 1674.506 kb on - strand at 1674.645 kb on + strand at 1674.656 kb on - strand at 1674.673 kb on - strand at 1674.673 kb on - strand at 1674.689 kb on + strand at 1674.706 kb on + strand at 1674.706 kb on + strand at 1674.706 kb on + strand at 1674.761 kb on - strand at 1674.780 kb on - strand at 1674.856 kb on + strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.874 kb on - strand, within EX28DRAFT_1658 at 1674.874 kb on - strand, within EX28DRAFT_1658 at 1674.875 kb on + strand, within EX28DRAFT_1658 at 1675.013 kb on + strand, within EX28DRAFT_1658 at 1675.033 kb on + strand, within EX28DRAFT_1658 at 1675.034 kb on - strand, within EX28DRAFT_1658 at 1675.048 kb on - strand, within EX28DRAFT_1658 at 1675.098 kb on + strand, within EX28DRAFT_1658 at 1675.098 kb on + strand, within EX28DRAFT_1658 at 1675.166 kb on + strand, within EX28DRAFT_1658 at 1675.177 kb on + strand, within EX28DRAFT_1658 at 1675.178 kb on - strand, within EX28DRAFT_1658 at 1675.236 kb on + strand, within EX28DRAFT_1658 at 1675.255 kb on - strand, within EX28DRAFT_1658
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,672,479 - EX28DRAFT_1656 0.34 +0.7 1,672,634 + EX28DRAFT_1656 0.51 +0.0 1,673,052 + -0.4 1,673,147 + -0.7 1,673,148 - -0.3 1,673,164 + -0.2 1,673,165 - +0.6 1,673,166 + -3.0 1,673,167 - +0.0 1,673,167 - +0.3 1,673,167 - -0.4 1,673,191 + -0.5 1,673,192 - +0.2 1,673,215 + -0.5 1,673,262 - +0.2 1,673,262 - +0.2 1,673,265 + +1.0 1,673,265 + +0.9 1,673,265 + -1.4 1,673,266 - -0.4 1,673,266 - -0.9 1,673,266 - +0.1 1,673,300 - +0.6 1,673,300 - -1.0 1,673,597 + EX28DRAFT_1657 0.34 +0.2 1,673,707 + EX28DRAFT_1657 0.43 -0.1 1,673,829 + EX28DRAFT_1657 0.53 +0.2 1,673,830 - EX28DRAFT_1657 0.53 -0.0 1,673,926 - EX28DRAFT_1657 0.61 +0.4 1,674,028 - EX28DRAFT_1657 0.70 +0.5 1,674,469 + -1.1 1,674,469 + -0.3 1,674,469 + -0.9 1,674,470 - -0.1 1,674,475 - +0.0 1,674,493 + -0.4 1,674,494 - +0.8 1,674,502 + -0.7 1,674,506 - -0.8 1,674,506 - -0.1 1,674,645 + -0.7 1,674,656 - -3.6 1,674,673 - -0.5 1,674,673 - -0.3 1,674,689 + -1.3 1,674,706 + -0.0 1,674,706 + +0.9 1,674,706 + -2.0 1,674,761 - -2.0 1,674,780 - -0.2 1,674,856 + EX28DRAFT_1658 0.14 -1.2 1,674,857 - EX28DRAFT_1658 0.15 +0.2 1,674,857 - EX28DRAFT_1658 0.15 -0.7 1,674,857 - EX28DRAFT_1658 0.15 -0.1 1,674,857 - EX28DRAFT_1658 0.15 -1.0 1,674,873 + EX28DRAFT_1658 0.16 -2.8 1,674,873 + EX28DRAFT_1658 0.16 +0.1 1,674,873 + EX28DRAFT_1658 0.16 +0.1 1,674,874 - EX28DRAFT_1658 0.16 -2.1 1,674,874 - EX28DRAFT_1658 0.16 -0.4 1,674,875 + EX28DRAFT_1658 0.16 -1.4 1,675,013 + EX28DRAFT_1658 0.28 +1.4 1,675,033 + EX28DRAFT_1658 0.30 -1.2 1,675,034 - EX28DRAFT_1658 0.30 -2.0 1,675,048 - EX28DRAFT_1658 0.31 -3.0 1,675,098 + EX28DRAFT_1658 0.36 +0.2 1,675,098 + EX28DRAFT_1658 0.36 -2.3 1,675,166 + EX28DRAFT_1658 0.41 -1.5 1,675,177 + EX28DRAFT_1658 0.42 -1.7 1,675,178 - EX28DRAFT_1658 0.42 -0.5 1,675,236 + EX28DRAFT_1658 0.48 -2.3 1,675,255 - EX28DRAFT_1658 0.49 -0.1
Or see this region's nucleotide sequence